Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NSQ16_RS12835 Genome accession   NZ_CP150155
Coordinates   2492272..2492889 (-) Length   205 a.a.
NCBI ID   WP_014480312.1    Uniprot ID   -
Organism   Bacillus sp. PS108     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2487272..2497889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ16_RS12805 (NSQ16_12805) rpsT 2487574..2487840 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  NSQ16_RS12810 (NSQ16_12810) holA 2487855..2488898 (-) 1044 WP_015714286.1 DNA polymerase III subunit delta -
  NSQ16_RS12815 (NSQ16_12815) - 2488938..2489087 (-) 150 WP_003229985.1 hypothetical protein -
  NSQ16_RS12820 (NSQ16_12820) - 2489128..2489262 (+) 135 WP_003229983.1 YqzM family protein -
  NSQ16_RS12825 (NSQ16_12825) comEC 2489302..2491632 (-) 2331 WP_339232215.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NSQ16_RS12830 (NSQ16_12830) - 2491636..2492205 (-) 570 WP_003229978.1 ComE operon protein 2 -
  NSQ16_RS12835 (NSQ16_12835) comEA 2492272..2492889 (-) 618 WP_014480312.1 competence protein ComEA Machinery gene
  NSQ16_RS12840 (NSQ16_12840) comER 2492973..2493794 (+) 822 WP_014480313.1 late competence protein ComER -
  NSQ16_RS12845 (NSQ16_12845) - 2493860..2494603 (-) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  NSQ16_RS12850 (NSQ16_12850) rsfS 2494600..2494956 (-) 357 WP_041333759.1 ribosome silencing factor -
  NSQ16_RS12855 (NSQ16_12855) yqeK 2494974..2495534 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NSQ16_RS12860 (NSQ16_12860) - 2495524..2496093 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  NSQ16_RS12865 (NSQ16_12865) yhbY 2496105..2496395 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  NSQ16_RS12870 (NSQ16_12870) aroE 2496389..2497231 (-) 843 WP_029317883.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21781.51 Da        Isoelectric Point: 4.7220

>NTDB_id=963675 NSQ16_RS12835 WP_014480312.1 2492272..2492889(-) (comEA) [Bacillus sp. PS108]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEEIAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=963675 NSQ16_RS12835 WP_014480312.1 2492272..2492889(-) (comEA) [Bacillus sp. PS108]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAATAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

99.512

100

0.995
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39