Detailed information NTG0096365

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OO986_RS03095
• Genome accession: NZ_AP026552
• Coordinates: 638347..639216 (-)
• Length: 289 a.a.
• NCBI ID: WP_108695082.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 633347..644216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO986_RS03060 (VV208B2_05360)	rpsP	634498..634746 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
OO986_RS03065 (VV208B2_05370)	rimM	634762..635310 (+)	549	WP_011079542.1	ribosome maturation factor RimM	-
OO986_RS03070 (VV208B2_05380)	trmD	635338..636087 (+)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OO986_RS03075 (VV208B2_05390)	rplS	636129..636482 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
OO986_RS03080 (VV208B2_05400)	yacG	636707..636901 (-)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
OO986_RS03085 (VV208B2_05410)	zapD	636964..637704 (-)	741	WP_011079546.1	cell division protein ZapD	-
OO986_RS03090 (VV208B2_05420)	coaE	637737..638345 (-)	609	WP_108695081.1	dephospho-CoA kinase	-
OO986_RS03095 (VV208B2_05430)	pilD	638347..639216 (-)	870	WP_108695082.1	A24 family peptidase	Machinery gene
OO986_RS03100 (VV208B2_05440)	pilC	639310..640536 (-)	1227	WP_045618629.1	type II secretion system F family protein	Machinery gene
OO986_RS03105 (VV208B2_05450)	pilB	640585..642273 (-)	1689	WP_108695083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OO986_RS03110 (VV208B2_05460)	-	642290..642772 (-)	483	WP_011151128.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OO986_RS03115 (VV208B2_05470)	nadC	642993..643880 (-)	888	WP_108695084.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32213.23 Da
• Isoelectric Point: 6.4630

>NTDB_id=96365 OO986_RS03095 WP_108695082.1 638347..639216(-) (pilD) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLISWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=96365 OO986_RS03095 WP_108695082.1 638347..639216(-) (pilD) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGTTAGCACTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTCACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGTCCAGTATCTCTGCAAGATTCAGTGATCGGCGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTAATGTGGGGAGATAGCTTGATTTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.431	99.654	0.772
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter nosocomialis M2	53.986	95.502	0.516
pilD	Acinetobacter baumannii D1279779	53.986	95.502	0.516
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457