Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OO986_RS01945 Genome accession   NZ_AP026552
Coordinates   413210..413857 (-) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 408210..418857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS01935 (VV208B2_03420) uvrA 409188..412010 (-) 2823 WP_225465024.1 excinuclease ABC subunit UvrA -
  OO986_RS01940 (VV208B2_03430) galU 412152..413024 (-) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OO986_RS01945 (VV208B2_03440) qstR 413210..413857 (-) 648 WP_011079388.1 response regulator transcription factor Regulator
  OO986_RS01950 (VV208B2_03450) ssb 414157..414696 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  OO986_RS01955 (VV208B2_03460) csrD 414849..416846 (+) 1998 WP_047112178.1 RNase E specificity factor CsrD -
  OO986_RS01960 (VV208B2_03470) - 416859..418319 (+) 1461 WP_108695146.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=96356 OO986_RS01945 WP_011079388.1 413210..413857(-) (qstR) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=96356 OO986_RS01945 WP_011079388.1 413210..413857(-) (qstR) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment