Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OO986_RS01425 Genome accession   NZ_AP026552
Coordinates   301790..302422 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 296790..307422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO986_RS01410 (VV208B2_02500) astA 298081..299100 (+) 1020 WP_013571001.1 arginine N-succinyltransferase -
  OO986_RS01415 (VV208B2_02510) astD 299118..300575 (+) 1458 WP_108695088.1 succinylglutamate-semialdehyde dehydrogenase -
  OO986_RS01420 (VV208B2_02520) - 300788..301579 (+) 792 WP_045596025.1 DUF1338 domain-containing protein -
  OO986_RS01425 (VV208B2_02530) crp 301790..302422 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  OO986_RS01430 (VV208B2_02540) - 302665..303534 (-) 870 WP_011079298.1 phosphoribulokinase -
  OO986_RS01435 (VV208B2_02550) - 303663..303875 (-) 213 WP_011079299.1 YheU family protein -
  OO986_RS01440 (VV208B2_02560) - 303931..304908 (-) 978 WP_108695273.1 hydrolase -
  OO986_RS01445 (VV208B2_02570) - 305054..305533 (-) 480 WP_011079301.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=96349 OO986_RS01425 WP_011079297.1 301790..302422(-) (crp) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=96349 OO986_RS01425 WP_011079297.1 301790..302422(-) (crp) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTCATTCATGCGGGCGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTCGAAGAAGGT
CAAGAGCGTACCGCATGGGTTCGTGCAAAATCACCTTGTGAAGTCGCAGAAATCTCATTCAAGAAATTCCGTCAGCTCAT
TCAGGTAAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTAGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTGGCGAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAGAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment