Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   OW489_RS05580 Genome accession   NZ_AP026446
Coordinates   1195358..1195642 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain CHC155     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190358..1200642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OW489_RS05555 (CHC155_10980) - 1190962..1192131 (-) 1170 WP_120856475.1 VirB8/TrbF family protein -
  OW489_RS05560 - 1192124..1192258 (-) 135 WP_120856477.1 type IV secretion system protein VirB7 -
  OW489_RS05565 (CHC155_10990) - 1192255..1194837 (-) 2583 WP_120856479.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  OW489_RS05570 (CHC155_11000) - 1194837..1195073 (-) 237 WP_120824245.1 hypothetical protein -
  OW489_RS05575 (CHC155_11010) comB3 1195084..1195347 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  OW489_RS05580 (CHC155_11020) comB2 1195358..1195642 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  OW489_RS05585 (CHC155_11030) - 1195639..1196118 (-) 480 WP_162966579.1 hypothetical protein -
  OW489_RS05590 (CHC155_11040) - 1196222..1197010 (-) 789 WP_120856481.1 integrase -
  OW489_RS05595 (CHC155_11050) - 1197065..1198969 (+) 1905 Protein_1105 HsdR family type I site-specific deoxyribonuclease -
  OW489_RS05600 (CHC155_11060) - 1198969..1199676 (+) 708 WP_120856482.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=96315 OW489_RS05580 WP_000736478.1 1195358..1195642(-) (comB2) [Helicobacter pylori strain CHC155]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=96315 OW489_RS05580 WP_000736478.1 1195358..1195642(-) (comB2) [Helicobacter pylori strain CHC155]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment