Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   WKF26_RS07555 Genome accession   NZ_CP150139
Coordinates   1692675..1694888 (+) Length   737 a.a.
NCBI ID   WP_369990436.1    Uniprot ID   -
Organism   Pseudomonas xanthosomatis strain YZ03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687675..1699888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKF26_RS07525 - 1688257..1688511 (-) 255 WP_369990434.1 DUF3077 domain-containing protein -
  WKF26_RS07530 - 1688508..1688735 (-) 228 WP_217888303.1 hypothetical protein -
  WKF26_RS07535 - 1689535..1690158 (+) 624 WP_369990435.1 glutathione S-transferase -
  WKF26_RS07540 - 1690301..1691233 (+) 933 WP_217888305.1 ABC transporter ATP-binding protein -
  WKF26_RS07545 - 1691230..1692009 (+) 780 WP_217842419.1 ABC transporter permease -
  WKF26_RS07550 - 1691893..1692531 (-) 639 WP_217888306.1 DUF2062 domain-containing protein -
  WKF26_RS07555 comA 1692675..1694888 (+) 2214 WP_369990436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WKF26_RS07560 exbB 1695177..1695812 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WKF26_RS07565 - 1695809..1696243 (+) 435 WP_369990437.1 ExbD/TolR family protein -
  WKF26_RS07570 lpxK 1696243..1697247 (+) 1005 WP_217842423.1 tetraacyldisaccharide 4'-kinase -
  WKF26_RS07575 - 1697288..1697473 (+) 186 WP_003247142.1 Trm112 family protein -
  WKF26_RS07580 kdsB 1697470..1698234 (+) 765 WP_369990438.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WKF26_RS07585 - 1698234..1698698 (+) 465 WP_369990439.1 low molecular weight protein-tyrosine-phosphatase -
  WKF26_RS07590 murB 1698695..1699714 (+) 1020 WP_369990440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 78996.42 Da        Isoelectric Point: 10.5779

>NTDB_id=963126 WKF26_RS07555 WP_369990436.1 1692675..1694888(+) (comA) [Pseudomonas xanthosomatis strain YZ03]
MRTGMLALALGLLSLRFLPALPSVGWLIVSLLLALACLRTRLWPLGCLVLGACWACWSAQQALDGRLAAQLDGRTLWLEG
RVTGLPARTGQGVRFELEQPLSRRAELALPQRLQLSWFDGPELRAGERWRLAVNLRRPHGLLNPHGPDREASLLARRIGA
TGTVKAGERVGEAAVSWRDGIRQRLLATDAHGREAVLAALVLGDGSGLAREDWNTLQATGTVHLLVISGQHIGLLAGLVY
GLVAGLARLGLWPARLPWLPWACGLALTAALAYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAATPLLMALLGVLLVE
PLASLLPGFWLSFGAVAVLALCFSARLGAWRPWQAWTRAQWVIAVGLLPLLLALGLPVSLTAPLANLLAVPWLSLAVLPP
ALLGTALLPVPLAGEGLLWLAGFSLDGLFSVLGWVAGQHPPWVPEPLPLWAWLLVCLGALLVLLPAGVPLRLPGAMLLLA
LWAPREQVPHGQVQVWQLDVGQGLAVLLRTRQHNLLYDAGPAQGDSDLGESVVLPTLRKLGVKQLDLLLISHAHADHAGG
AAAIRRGLPVLRELGGEGTGGAICNSGERWQWDGVAFELWHWPQGPSSNERSCVLRVQAGGERLLLAGDMEAGAERAWLA
SNANTRIDWLQAPHHGSRSSSTEAFIQALAPRGVLISRGRHNSFGHPHAQVIERFGRHGVQVHDTAIDGALGLRLGSQGG
VVGERAGRRFWREGGGS

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=963126 WKF26_RS07555 WP_369990436.1 1692675..1694888(+) (comA) [Pseudomonas xanthosomatis strain YZ03]
ATGCGCACAGGGATGCTTGCGCTGGCGCTCGGGCTGCTCAGCCTGCGCTTTCTACCCGCCTTGCCATCGGTCGGCTGGCT
GATCGTTTCACTGCTATTGGCACTTGCCTGCCTGCGCACACGGCTGTGGCCGCTGGGTTGCTTGGTGCTGGGCGCCTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGGCCGCCTGGCCGCGCAGCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGACGGGCTTGCCGGCGCGTACCGGGCAGGGGGTGCGCTTCGAGCTTGAACAGCCACTGTCACGCCGGGCTGAACT
GGCGCTGCCGCAACGCCTGCAACTGAGCTGGTTCGACGGCCCCGAGCTGCGCGCGGGCGAGCGCTGGCGCCTGGCGGTCA
ACCTGCGCCGCCCCCACGGGCTGCTCAACCCCCATGGGCCGGACCGCGAGGCCTCGCTGCTGGCGCGGCGCATCGGTGCC
ACCGGTACGGTCAAGGCCGGCGAGCGAGTGGGGGAGGCGGCAGTCAGCTGGCGCGACGGCATCCGCCAGCGCTTGCTGGC
CACCGATGCCCATGGCCGCGAGGCGGTGCTGGCGGCGTTGGTGCTGGGCGATGGCAGCGGGCTGGCGCGGGAGGACTGGA
ATACCCTGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGCTGGTCTAC
GGCCTTGTGGCGGGCCTGGCGCGGCTCGGCCTGTGGCCCGCGCGGCTGCCCTGGCTGCCCTGGGCCTGCGGCCTGGCCCT
GACGGCGGCGCTGGCCTACGGCTGGCTGGCGGGGTTTGGCGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGT
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGCCGCTACGCCGCTGCTGATGGCGTTGCTCGGGGTGTTGCTGGTGGAG
CCGCTGGCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGGTGCTGGCGCTGTGCTTTTCGGCCCGGCT
GGGTGCCTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAGTGGGTGATCGCCGTGGGCCTGCTGCCCTTGCTGCTGGCGC
TGGGGTTGCCGGTCAGCCTCACGGCGCCGTTGGCCAACCTGCTGGCGGTGCCTTGGCTGAGCCTGGCGGTACTGCCACCG
GCGCTGCTGGGTACTGCGCTGTTGCCGGTGCCGTTGGCCGGGGAGGGGCTGTTGTGGCTGGCCGGTTTTTCGCTGGACGG
GCTGTTCAGCGTGCTGGGCTGGGTGGCCGGGCAGCACCCACCCTGGGTGCCCGAGCCCTTGCCGCTGTGGGCCTGGCTGC
TGGTGTGCCTGGGCGCATTGCTGGTGCTGTTGCCTGCCGGTGTTCCGCTGCGATTACCCGGTGCGATGCTGCTGCTGGCG
CTGTGGGCGCCACGCGAGCAGGTACCCCATGGCCAGGTGCAGGTATGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTGCT
GCTGCGCACCCGCCAGCACAACCTGCTGTACGACGCGGGCCCCGCCCAGGGCGACAGCGACCTGGGCGAAAGCGTGGTGC
TGCCGACCTTGCGCAAGCTGGGGGTGAAACAGCTGGACCTGCTGCTGATCAGCCATGCCCATGCCGACCATGCCGGTGGC
GCCGCAGCCATTCGCCGGGGCCTGCCGGTGCTGCGCGAGCTGGGCGGGGAGGGCACCGGCGGGGCGATTTGCAACAGCGG
TGAGCGCTGGCAGTGGGATGGGGTGGCGTTCGAGCTGTGGCACTGGCCGCAGGGGCCGTCGAGCAACGAGCGCTCCTGTG
TGCTGCGGGTGCAGGCGGGCGGCGAGCGATTGCTGTTGGCCGGCGACATGGAGGCCGGTGCCGAGCGGGCCTGGCTTGCG
AGTAACGCCAATACCCGCATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGGTCGTCGTCCACTGAGGCGTTCATCCA
GGCCCTGGCGCCCCGCGGGGTGTTGATATCGCGGGGCCGGCACAACAGCTTCGGGCACCCGCATGCGCAGGTGATCGAGC
GCTTTGGGCGCCATGGGGTGCAGGTGCATGACACGGCGATTGACGGTGCGCTGGGGTTGCGCTTGGGCAGCCAGGGTGGG
GTGGTGGGAGAGCGGGCCGGTCGGCGGTTCTGGCGGGAGGGGGGAGGCAGTTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-169)

Competence protein (Competence)

(200-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.946

97.829

0.577
  comA Ralstonia pseudosolanacearum GMI1000

37.136

100

0.398