Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WKF26_RS07560 Genome accession   NZ_CP150139
Coordinates   1695177..1695812 (+) Length   211 a.a.
NCBI ID   WP_028690976.1    Uniprot ID   A0A4Y8SF72
Organism   Pseudomonas xanthosomatis strain YZ03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690177..1700812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKF26_RS07540 - 1690301..1691233 (+) 933 WP_217888305.1 ABC transporter ATP-binding protein -
  WKF26_RS07545 - 1691230..1692009 (+) 780 WP_217842419.1 ABC transporter permease -
  WKF26_RS07550 - 1691893..1692531 (-) 639 WP_217888306.1 DUF2062 domain-containing protein -
  WKF26_RS07555 comA 1692675..1694888 (+) 2214 WP_369990436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WKF26_RS07560 exbB 1695177..1695812 (+) 636 WP_028690976.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WKF26_RS07565 - 1695809..1696243 (+) 435 WP_369990437.1 ExbD/TolR family protein -
  WKF26_RS07570 lpxK 1696243..1697247 (+) 1005 WP_217842423.1 tetraacyldisaccharide 4'-kinase -
  WKF26_RS07575 - 1697288..1697473 (+) 186 WP_003247142.1 Trm112 family protein -
  WKF26_RS07580 kdsB 1697470..1698234 (+) 765 WP_369990438.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WKF26_RS07585 - 1698234..1698698 (+) 465 WP_369990439.1 low molecular weight protein-tyrosine-phosphatase -
  WKF26_RS07590 murB 1698695..1699714 (+) 1020 WP_369990440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=963127 WKF26_RS07560 WP_028690976.1 1695177..1695812(+) (exbB) [Pseudomonas xanthosomatis strain YZ03]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=963127 WKF26_RS07560 WP_028690976.1 1695177..1695812(+) (exbB) [Pseudomonas xanthosomatis strain YZ03]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGCTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y8SF72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829