NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	WMO34_RS04745	Genome accession	NZ_CP150121
Coordinates	1010750..1011175 (+)	Length	141 a.a.
NCBI ID	WP_024711606.1	Uniprot ID	-
Organism	Xanthomonas oryzae pv. oryzicola strain Selingue 50
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1005750..1016175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMO34_RS04730 (WMO34_04720)	coaE	1007645..1008253 (-)	609	WP_014504326.1	dephospho-CoA kinase	-
WMO34_RS04735 (WMO34_04725)	-	1008267..1009130 (-)	864	WP_014504325.1	A24 family peptidase	-
WMO34_RS04740 (WMO34_04730)	pilC	1009137..1010396 (-)	1260	WP_014504324.1	type II secretion system F family protein	Machinery gene
WMO34_RS04745 (WMO34_04735)	pilA	1010750..1011175 (+)	426	WP_024711606.1	pilin	Machinery gene
WMO34_RS04750 (WMO34_04740)	-	1011311..1012900 (+)	1590	WP_044749929.1	phosphoethanolamine transferase	-
WMO34_RS04755 (WMO34_04745)	-	1012911..1013540 (+)	630	WP_024711608.1	hypothetical protein	-
WMO34_RS04760 (WMO34_04750)	-	1013510..1015036 (+)	1527	WP_044749930.1	spermidine synthase	-

Sequence

Protein

Download Length: 141 a.a. Molecular weight: 14386.66 Da Isoelectric Point: 9.0011

                                >NTDB_id=962922 WMO34_RS04745 WP_024711606.1 1010750..1011175(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]

MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYVFPGETK

YVSAVTIASGTGKVTVTSKVPNAGGDIVLTPTDVGGGQLKWTCSSAIATKYLPAECRSSGT

Nucleotide

Download Length: 426 bp

                                >NTDB_id=962922 WMO34_RS04745 WP_024711606.1 1010750..1011175(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain Selingue 50]

ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT

GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG

CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGTATTCCCGGGTGAAACGAAG

TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCAAGGTGCCCAACGCTGGCGGTGACAT

CGTGCTGACCCCGACTGACGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCGCCACCAAGTACCTGCCGG

CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	42.683	100	0.496
pilA2	Legionella pneumophila str. Paris	50.735	96.454	0.489
pilA2	Legionella pneumophila strain ERS1305867	50	96.454	0.482
comP	Acinetobacter baylyi ADP1	41.83	100	0.454
pilE	Neisseria gonorrhoeae strain FA1090	36.471	100	0.44
pilE	Neisseria gonorrhoeae MS11	36.42	100	0.418
pilA/pilA1	Eikenella corrodens VA1	39.333	100	0.418
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.029	97.872	0.411
pilA/pilAII	Pseudomonas stutzeri DSM 10701	41.606	97.163	0.404
pilA	Pseudomonas aeruginosa PAK	36.424	100	0.39
pilA	Acinetobacter baumannii strain A118	37.589	100	0.376
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	30.909	100	0.362
pilA	Vibrio cholerae strain A1552	30.909	100	0.362
pilA	Vibrio cholerae C6706	30.909	100	0.362
pilA	Glaesserella parasuis strain SC1401	38.636	93.617	0.362

Detailed information NTG0962922