Detailed information NTG0962372

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: WKQ99_RS08350
• Genome accession: NZ_CP149965
• Coordinates: 1797057..1799291 (+)
• Length: 744 a.a.
• NCBI ID: WP_273525636.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain EMP42
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1792057..1804291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WKQ99_RS08325 (WKQ99_08325)	-	1793094..1793753 (+)	660	WP_110645984.1	transglutaminase family protein	-
WKQ99_RS08330 (WKQ99_08330)	-	1793797..1794420 (+)	624	WP_024013937.1	glutathione S-transferase	-
WKQ99_RS08335 (WKQ99_08335)	-	1794554..1795486 (+)	933	WP_016771010.1	ABC transporter ATP-binding protein	-
WKQ99_RS08340 (WKQ99_08340)	-	1795483..1796262 (+)	780	WP_039760202.1	ABC transporter permease	-
WKQ99_RS08345 (WKQ99_08345)	-	1796402..1796920 (-)	519	WP_016770668.1	DUF2062 domain-containing protein	-
WKQ99_RS08350 (WKQ99_08350)	comA	1797057..1799291 (+)	2235	WP_273525636.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
WKQ99_RS08355 (WKQ99_08355)	exbB	1799393..1800028 (+)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
WKQ99_RS08360 (WKQ99_08360)	-	1800025..1800453 (+)	429	WP_016771006.1	biopolymer transporter ExbD	-
WKQ99_RS08365 (WKQ99_08365)	lpxK	1800453..1801463 (+)	1011	WP_073472246.1	tetraacyldisaccharide 4'-kinase	-
WKQ99_RS08370 (WKQ99_08370)	-	1801487..1801672 (+)	186	WP_003179363.1	Trm112 family protein	-
WKQ99_RS08375 (WKQ99_08375)	kdsB	1801669..1802433 (+)	765	WP_073472249.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
WKQ99_RS08380 (WKQ99_08380)	-	1802433..1802897 (+)	465	WP_122746711.1	low molecular weight protein-tyrosine-phosphatase	-
WKQ99_RS08385 (WKQ99_08385)	murB	1802894..1803913 (+)	1020	WP_130929477.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81899.05 Da
• Isoelectric Point: 9.9157

>NTDB_id=962372 WKQ99_RS08350 WP_273525636.1 1797057..1799291(+) (comA) [Pseudomonas atacamensis strain EMP42]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPHAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAISLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPFWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGFNVHRVVSGDPPNLPPELNAEACASGERWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEHGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=962372 WKQ99_RS08350 WP_273525636.1 1797057..1799291(+) (comA) [Pseudomonas atacamensis strain EMP42]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGTTCACGCCACGAAAAGCT
GCCGTCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAATAGTGGTGAGCGATGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGCACGCCTTCGACTACGAGGCCTGGCTGCTGGCGCAACGGATCGGCGCAACCGGC
ACGATCAAGGATGGCCAGCGCTTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTCGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGTTTGCTGGCGGCGGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCCTGTGGTCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGTTTCGACGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTATTGTTGT
GGCGCCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGCTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCTTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
CTGGCGGTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCAGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCTGCCGCCATTCCATTTTGGGCGTTGGTCCTGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGAGGCGTGCCAATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTTCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGCTTCAACGTGCACCGAGTGGTCAGCGGCGATCCACCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACGGTGGCAGTGGGACGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCAGCCGATGACAGCA
ACCAGCGTTCCTGTGTGTTGCAGATCGAGGCCAACGGCGAACGCCTGCTGCTCACCGGCGACATCGACACTCATGCCGAG
CGCGTCCTGCTCGACAGCCCACTGGCCGTGCCGACTCAGTGGCTGCAATCGCCCCATCACGGCAGTCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCACGGTGCCATTCATCTGCAACTG
GGCAGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.143	96.64	0.61
comA	Ralstonia pseudosolanacearum GMI1000	35.476	100	0.371