Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WKQ99_RS08355 Genome accession   NZ_CP149965
Coordinates   1799393..1800028 (+) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas atacamensis strain EMP42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1794393..1805028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKQ99_RS08335 (WKQ99_08335) - 1794554..1795486 (+) 933 WP_016771010.1 ABC transporter ATP-binding protein -
  WKQ99_RS08340 (WKQ99_08340) - 1795483..1796262 (+) 780 WP_039760202.1 ABC transporter permease -
  WKQ99_RS08345 (WKQ99_08345) - 1796402..1796920 (-) 519 WP_016770668.1 DUF2062 domain-containing protein -
  WKQ99_RS08350 (WKQ99_08350) comA 1797057..1799291 (+) 2235 WP_273525636.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WKQ99_RS08355 (WKQ99_08355) exbB 1799393..1800028 (+) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WKQ99_RS08360 (WKQ99_08360) - 1800025..1800453 (+) 429 WP_016771006.1 biopolymer transporter ExbD -
  WKQ99_RS08365 (WKQ99_08365) lpxK 1800453..1801463 (+) 1011 WP_073472246.1 tetraacyldisaccharide 4'-kinase -
  WKQ99_RS08370 (WKQ99_08370) - 1801487..1801672 (+) 186 WP_003179363.1 Trm112 family protein -
  WKQ99_RS08375 (WKQ99_08375) kdsB 1801669..1802433 (+) 765 WP_073472249.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WKQ99_RS08380 (WKQ99_08380) - 1802433..1802897 (+) 465 WP_122746711.1 low molecular weight protein-tyrosine-phosphatase -
  WKQ99_RS08385 (WKQ99_08385) murB 1802894..1803913 (+) 1020 WP_130929477.1 UDP-N-acetylmuramate dehydrogenase -
  WKQ99_RS08390 (WKQ99_08390) - 1804163..1804633 (+) 471 WP_016771000.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=962373 WKQ99_RS08355 WP_016771007.1 1799393..1800028(+) (exbB) [Pseudomonas atacamensis strain EMP42]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=962373 WKQ99_RS08355 WP_016771007.1 1799393..1800028(+) (exbB) [Pseudomonas atacamensis strain EMP42]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTTGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATTCTCGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCCGGCATGACTACCAATGCTTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGGATTCCAGCGGTGTTCTTCCACCGGTTTTTGCAGCGCCGCATCGACGAGCTGGTGGTGGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858