Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WGQ49_RS07205 Genome accession   NZ_CP149886
Coordinates   1401896..1402207 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396896..1407207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS07185 (WGQ49_07185) ctsE 1397765..1399324 (-) 1560 WP_052802022.1 GspE/PulE family protein Machinery gene
  WGQ49_RS07190 (WGQ49_07190) ctsX 1399314..1399901 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WGQ49_RS07195 (WGQ49_07195) ctsP 1399905..1400513 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WGQ49_RS07200 (WGQ49_07200) ctsD 1400506..1401918 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ49_RS07205 (WGQ49_07205) ctsR 1401896..1402207 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WGQ49_RS07210 (WGQ49_07210) nifJ 1402231..1405791 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WGQ49_RS07215 (WGQ49_07215) - 1405884..1406525 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=962090 WGQ49_RS07205 WP_002855438.1 1401896..1402207(-) (ctsR) [Campylobacter jejuni strain NPRC(S) 01.13897]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=962090 WGQ49_RS07205 WP_002855438.1 1401896..1402207(-) (ctsR) [Campylobacter jejuni strain NPRC(S) 01.13897]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1