Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WGQ49_RS07190 Genome accession   NZ_CP149886
Coordinates   1399314..1399901 (-) Length   195 a.a.
NCBI ID   WP_002867245.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394314..1404901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS07170 (WGQ49_07170) - 1395062..1395826 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WGQ49_RS07175 (WGQ49_07175) - 1395830..1396594 (+) 765 WP_002855821.1 TSUP family transporter -
  WGQ49_RS07180 (WGQ49_07180) ctsF 1396587..1397768 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  WGQ49_RS07185 (WGQ49_07185) ctsE 1397765..1399324 (-) 1560 WP_052802022.1 GspE/PulE family protein Machinery gene
  WGQ49_RS07190 (WGQ49_07190) ctsX 1399314..1399901 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WGQ49_RS07195 (WGQ49_07195) ctsP 1399905..1400513 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WGQ49_RS07200 (WGQ49_07200) ctsD 1400506..1401918 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ49_RS07205 (WGQ49_07205) ctsR 1401896..1402207 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23354.40 Da        Isoelectric Point: 9.8409

>NTDB_id=962087 WGQ49_RS07190 WP_002867245.1 1399314..1399901(-) (ctsX) [Campylobacter jejuni strain NPRC(S) 01.13897]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPNYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=962087 WGQ49_RS07190 WP_002867245.1 1399314..1399901(-) (ctsX) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAACTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATTGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.462

100

0.985