Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WGQ49_RS07195 Genome accession   NZ_CP149886
Coordinates   1399905..1400513 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1394905..1405513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS07170 (WGQ49_07170) - 1395062..1395826 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WGQ49_RS07175 (WGQ49_07175) - 1395830..1396594 (+) 765 WP_002855821.1 TSUP family transporter -
  WGQ49_RS07180 (WGQ49_07180) ctsF 1396587..1397768 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  WGQ49_RS07185 (WGQ49_07185) ctsE 1397765..1399324 (-) 1560 WP_052802022.1 GspE/PulE family protein Machinery gene
  WGQ49_RS07190 (WGQ49_07190) ctsX 1399314..1399901 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WGQ49_RS07195 (WGQ49_07195) ctsP 1399905..1400513 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WGQ49_RS07200 (WGQ49_07200) ctsD 1400506..1401918 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ49_RS07205 (WGQ49_07205) ctsR 1401896..1402207 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=962088 WGQ49_RS07195 WP_002851464.1 1399905..1400513(-) (ctsP) [Campylobacter jejuni strain NPRC(S) 01.13897]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=962088 WGQ49_RS07195 WP_002851464.1 1399905..1400513(-) (ctsP) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995