Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WGQ49_RS07180 Genome accession   NZ_CP149886
Coordinates   1396587..1397768 (-) Length   393 a.a.
NCBI ID   WP_002867247.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391587..1402768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS07150 (WGQ49_07150) - 1392131..1392472 (+) 342 WP_002867250.1 hypothetical protein -
  WGQ49_RS07155 (WGQ49_07155) flgM 1392535..1392732 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  WGQ49_RS07160 (WGQ49_07160) - 1392775..1393209 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WGQ49_RS07165 (WGQ49_07165) flgK 1393219..1395045 (+) 1827 WP_002873603.1 flagellar hook-associated protein FlgK -
  WGQ49_RS07170 (WGQ49_07170) - 1395062..1395826 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WGQ49_RS07175 (WGQ49_07175) - 1395830..1396594 (+) 765 WP_002855821.1 TSUP family transporter -
  WGQ49_RS07180 (WGQ49_07180) ctsF 1396587..1397768 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  WGQ49_RS07185 (WGQ49_07185) ctsE 1397765..1399324 (-) 1560 WP_052802022.1 GspE/PulE family protein Machinery gene
  WGQ49_RS07190 (WGQ49_07190) ctsX 1399314..1399901 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WGQ49_RS07195 (WGQ49_07195) ctsP 1399905..1400513 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WGQ49_RS07200 (WGQ49_07200) ctsD 1400506..1401918 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ49_RS07205 (WGQ49_07205) ctsR 1401896..1402207 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45750.33 Da        Isoelectric Point: 9.0938

>NTDB_id=962085 WGQ49_RS07180 WP_002867247.1 1396587..1397768(-) (ctsF) [Campylobacter jejuni strain NPRC(S) 01.13897]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=962085 WGQ49_RS07180 WP_002867247.1 1396587..1397768(-) (ctsF) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987