Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WGQ50_RS03090 Genome accession   NZ_CP149884
Coordinates   597757..598203 (+) Length   148 a.a.
NCBI ID   WP_032685882.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592757..603203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS03070 (WGQ50_03070) - 593709..595133 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  WGQ50_RS03075 (WGQ50_03075) uvrB 595168..597141 (-) 1974 WP_060785209.1 excinuclease ABC subunit UvrB -
  WGQ50_RS03080 (WGQ50_03080) - 597295..597525 (+) 231 WP_002776426.1 hypothetical protein -
  WGQ50_RS03085 (WGQ50_03085) - 597515..597760 (+) 246 WP_002776428.1 hypothetical protein -
  WGQ50_RS03090 (WGQ50_03090) Cj0683 597757..598203 (+) 447 WP_032685882.1 type II secretion system protein Machinery gene
  WGQ50_RS03095 (WGQ50_03095) - 598200..600038 (+) 1839 WP_002787399.1 primosomal protein N' -
  WGQ50_RS03100 (WGQ50_03100) ispG 600098..601171 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  WGQ50_RS03105 (WGQ50_03105) flgH 601255..601953 (-) 699 WP_002793310.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 7.6247

>NTDB_id=962043 WGQ50_RS03090 WP_032685882.1 597757..598203(+) (Cj0683) [Campylobacter coli strain NPRC(S) 01.13898]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQEE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=962043 WGQ50_RS03090 WP_032685882.1 597757..598203(+) (Cj0683) [Campylobacter coli strain NPRC(S) 01.13898]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTAGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAGAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574