Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WGQ50_RS02915 Genome accession   NZ_CP149884
Coordinates   566306..567076 (+) Length   256 a.a.
NCBI ID   WP_060785216.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 561306..572076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS02900 (WGQ50_02900) - 562182..564116 (-) 1935 WP_060785217.1 ribonuclease R family protein -
  WGQ50_RS02905 (WGQ50_02905) ilvC 564239..565261 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  WGQ50_RS02910 (WGQ50_02910) - 565264..566316 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  WGQ50_RS02915 (WGQ50_02915) dprA 566306..567076 (+) 771 WP_060785216.1 DNA-processing protein DprA Machinery gene
  WGQ50_RS02920 (WGQ50_02920) ruvX 567073..567453 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  WGQ50_RS02925 (WGQ50_02925) - 567443..568318 (+) 876 WP_002781660.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WGQ50_RS02930 (WGQ50_02930) msrA 568541..569041 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WGQ50_RS02935 (WGQ50_02935) ppa 569089..569607 (-) 519 WP_060785215.1 inorganic diphosphatase -
  WGQ50_RS02940 (WGQ50_02940) - 569617..570192 (-) 576 WP_002781658.1 adenylate kinase -
  WGQ50_RS02945 (WGQ50_02945) aspS 570189..571940 (-) 1752 WP_002781656.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28792.13 Da        Isoelectric Point: 5.2497

>NTDB_id=962042 WGQ50_RS02915 WP_060785216.1 566306..567076(+) (dprA) [Campylobacter coli strain NPRC(S) 01.13898]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESHYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQNYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=962042 WGQ50_RS02915 WP_060785216.1 566306..567076(+) (dprA) [Campylobacter coli strain NPRC(S) 01.13898]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTGGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCCACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAAATTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.917

93.75

0.449