Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   WKU69_RS17705 Genome accession   NZ_CP149838
Coordinates   3639650..3640132 (-) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain 2024CK-00130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634650..3645132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU69_RS17670 (WKU69_17670) - 3634758..3635792 (+) 1035 WP_001189452.1 lipase secretion chaperone -
  WKU69_RS17675 (WKU69_17675) - 3635907..3636848 (+) 942 WP_085916958.1 triacylglycerol lipase -
  WKU69_RS17680 (WKU69_17680) rplS 3636900..3637268 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  WKU69_RS17685 (WKU69_17685) trmD 3637476..3638216 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WKU69_RS17690 (WKU69_17690) rimM 3638262..3638810 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  WKU69_RS17695 (WKU69_17695) rpsP 3638830..3639081 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  WKU69_RS17700 (WKU69_17700) pilE 3639228..3639653 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  WKU69_RS17705 (WKU69_17705) pilY2 3639650..3640132 (-) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WKU69_RS17710 (WKU69_17710) pilY1 3640143..3643997 (-) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  WKU69_RS17715 (WKU69_17715) pilX 3644009..3644827 (-) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=961884 WKU69_RS17705 WP_001046489.1 3639650..3640132(-) (pilY2) [Acinetobacter baumannii strain 2024CK-00130]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=961884 WKU69_RS17705 WP_001046489.1 3639650..3640132(-) (pilY2) [Acinetobacter baumannii strain 2024CK-00130]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45