Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   WKU69_RS17715 Genome accession   NZ_CP149838
Coordinates   3644009..3644827 (-) Length   272 a.a.
NCBI ID   WP_000149370.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639009..3649827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU69_RS17700 (WKU69_17700) pilE 3639228..3639653 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  WKU69_RS17705 (WKU69_17705) pilY2 3639650..3640132 (-) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WKU69_RS17710 (WKU69_17710) pilY1 3640143..3643997 (-) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  WKU69_RS17715 (WKU69_17715) pilX 3644009..3644827 (-) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WKU69_RS17720 (WKU69_17720) pilW 3644824..3645825 (-) 1002 WP_000079194.1 PilW family protein Machinery gene
  WKU69_RS17725 (WKU69_17725) pilV 3645826..3646386 (-) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  WKU69_RS17730 (WKU69_17730) fimU 3646380..3646853 (-) 474 WP_001214063.1 GspH/FimT family pseudopilin Machinery gene
  WKU69_RS17735 (WKU69_17735) ispH 3647023..3647973 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WKU69_RS17740 (WKU69_17740) gmk 3648096..3648725 (+) 630 WP_000015937.1 guanylate kinase -
  WKU69_RS17745 (WKU69_17745) rpoZ 3648798..3649076 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WKU69_RS17750 (WKU69_17750) - 3649115..3649245 (+) 131 Protein_3467 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28845.66 Da        Isoelectric Point: 5.6905

>NTDB_id=961886 WKU69_RS17715 WP_000149370.1 3644009..3644827(-) (pilX) [Acinetobacter baumannii strain 2024CK-00130]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASNSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=961886 WKU69_RS17715 WP_000149370.1 3644009..3644827(-) (pilX) [Acinetobacter baumannii strain 2024CK-00130]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCGATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAAATTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989