Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V8N34_RS08650 Genome accession   NZ_CP149804
Coordinates   1779250..1779744 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain YA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1774250..1784744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS08635 (V8N34_08635) - 1776972..1777916 (+) 945 WP_339059834.1 magnesium transporter CorA family protein -
  V8N34_RS08640 (V8N34_08640) - 1777932..1778588 (+) 657 WP_044753820.1 DUF1129 domain-containing protein -
  V8N34_RS08645 (V8N34_08645) rpsR 1778978..1779217 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  V8N34_RS08650 (V8N34_08650) ssbA 1779250..1779744 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  V8N34_RS08655 (V8N34_08655) rpsF 1779756..1780046 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  V8N34_RS08660 (V8N34_08660) - 1780218..1781207 (-) 990 WP_318825356.1 lipoate--protein ligase -
  V8N34_RS08665 (V8N34_08665) - 1781341..1782531 (+) 1191 WP_172059902.1 DUF6688 family protein -
  V8N34_RS08670 (V8N34_08670) lpdA 1782582..1784342 (-) 1761 WP_339059835.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=961517 V8N34_RS08650 WP_002942409.1 1779250..1779744(-) (ssbA) [Streptococcus suis strain YA]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=961517 V8N34_RS08650 WP_002942409.1 1779250..1779744(-) (ssbA) [Streptococcus suis strain YA]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366