Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   V8N34_RS03010 Genome accession   NZ_CP149804
Coordinates   622187..623536 (+) Length   449 a.a.
NCBI ID   WP_053867001.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 617187..628536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS02985 (V8N34_02985) - 618297..618956 (-) 660 WP_002935828.1 amino acid ABC transporter permease -
  V8N34_RS02990 (V8N34_02990) - 618971..619669 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  V8N34_RS02995 (V8N34_02995) - 619684..620523 (-) 840 WP_024382220.1 transporter substrate-binding domain-containing protein -
  V8N34_RS03000 (V8N34_03000) - 620534..621295 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  V8N34_RS03005 (V8N34_03005) micA 621490..622194 (+) 705 WP_002935840.1 response regulator YycF Regulator
  V8N34_RS03010 (V8N34_03010) micB 622187..623536 (+) 1350 WP_053867001.1 cell wall metabolism sensor histidine kinase VicK Regulator
  V8N34_RS03015 (V8N34_03015) vicX 623543..624346 (+) 804 WP_029172537.1 MBL fold metallo-hydrolase Regulator
  V8N34_RS03020 (V8N34_03020) - 625067..626089 (+) 1023 WP_172091467.1 IS30 family transposase -
  V8N34_RS03025 (V8N34_03025) - 626261..627463 (-) 1203 Protein_546 IS110 family transposase -
  V8N34_RS03030 (V8N34_03030) - 627742..628275 (+) 534 WP_232088998.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51047.14 Da        Isoelectric Point: 4.5202

>NTDB_id=961502 V8N34_RS03010 WP_053867001.1 622187..623536(+) (micB) [Streptococcus suis strain YA]
MINQLRYLMTTAEFWFVVILIGFLIALTVLLIENYRDNKQIKQLNQKVNALIEGNYADVLDMRGSPEITDMANSLNDLSE
VIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSNPKQEQYHLLEVLDLSDRYTLRDLLAQTPE
IVIDHINENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWDDSDEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=961502 V8N34_RS03010 WP_053867001.1 622187..623536(+) (micB) [Streptococcus suis strain YA]
ATGATTAATCAATTACGTTATTTAATGACCACGGCAGAATTTTGGTTTGTTGTCATTTTGATTGGCTTTCTAATTGCTCT
GACGGTCCTTTTGATTGAAAACTATCGGGATAATAAGCAAATTAAACAACTCAATCAAAAAGTCAATGCCTTAATTGAGG
GGAATTATGCAGATGTGTTGGACATGAGGGGAAGTCCTGAAATCACAGACATGGCTAATTCTCTTAATGATCTGTCCGAG
GTCATCCGCTTAACCCATGATAATTTAGAACAAGAAAAGACGCGTCTGACGTCCATTCTGTCCTATATGAGTGACGGTGT
TATTGCTACAGACCGTATCGGACGGATCATCATGATTAACGATATGGCCCAGAAACAGTTGGGGTTATCTAACCCAAAGC
AGGAGCAGTATCATCTGCTAGAGGTTTTAGATTTATCAGACCGTTATACATTGAGAGATTTGTTGGCTCAGACACCTGAG
ATTGTGATTGATCACATCAATGAAAATGAAGAATTTCTGACTTTACGTGCTAATTTTGCCACGATTCGTAGTGAGAGTGG
CCTGATTTCTGGCTTGGTAGTCGTCTTGCATGATATGACCGAGCAGGCCAAGGAAGAACGGGAACGTAGGCTATTTGTGT
CAAATGTGAGTCATGAATTGCGTACGCCATTGACTTCCGTTAAATCCTATCTAGAGGCTCTGGATGAGGGAGCGCTGACG
GAGTCTGTTGCACCGAGTTTTGTTAAGGTATCCTTAGATGAGACCAACCGCATGATGCGGATGATTACAGACCTCCTTAG
CTTATCGCGCATTGATAATCAAGTTGGTCAGATAGATGTCGAACTGATAAACTTTACTGCTTTTGTGACCTTTATTCTTA
ACCGTTTTGACCAAATGAAAAATGCTGATTCAGATAAGGTCTATACGATTGTTCGTGACTATCAAATCAGTCCTATTTGG
GTTGAGATTGATACAGATAAGATGACTCAGGTTTTAGATAATATCTTAAATAATGCCATTAAATATTCGCCAGACGGCGG
GACAATTACCTTCAGCATGAAGACCACAGATAGCCAGTTGATTGTATCCGTCTCAGACGAAGGTCTGGGGATTCCGAAAG
CAGATTTACCTAGAATTTTTGACCGATTTTATCGCGTAGACAAGGCACGATCTCGTGCCCAAGGTGGTACAGGTCTTGGT
TTAGCTATTGCAAAAGAAATCGTGAAACAACATAAGGGCTTTATCTGGGCTAAAAGCGAATATGGTCATGGCTCAACGTT
TACAATTGTCTTGCCGTACAGCAAGGACATCGCACTAGATGAGTGGGATGATTCAGATGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.183

97.105

0.682
  vicK Streptococcus mutans UA159

70.72

89.755

0.635