Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   V8N34_RS03015 Genome accession   NZ_CP149804
Coordinates   623543..624346 (+) Length   267 a.a.
NCBI ID   WP_029172537.1    Uniprot ID   A0A3S6JK27
Organism   Streptococcus suis strain YA     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 625067..652599 623543..624346 flank 721
IScluster/Tn 625067..627463 623543..624346 flank 721


Gene organization within MGE regions


Location: 623543..652599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS03015 (V8N34_03015) vicX 623543..624346 (+) 804 WP_029172537.1 MBL fold metallo-hydrolase Regulator
  V8N34_RS03020 (V8N34_03020) - 625067..626089 (+) 1023 WP_172091467.1 IS30 family transposase -
  V8N34_RS03025 (V8N34_03025) - 626261..627463 (-) 1203 Protein_546 IS110 family transposase -
  V8N34_RS03030 (V8N34_03030) - 627742..628275 (+) 534 WP_232088998.1 ATP-binding cassette domain-containing protein -
  V8N34_RS03035 (V8N34_03035) - 628251..629119 (+) 869 Protein_548 MobA/MobL family protein -
  V8N34_RS03040 (V8N34_03040) - 629196..629837 (+) 642 WP_029749608.1 hypothetical protein -
  V8N34_RS03045 (V8N34_03045) - 630002..630247 (+) 246 Protein_550 ABC transporter ATP-binding protein -
  V8N34_RS03050 (V8N34_03050) pbp2b 630339..632414 (+) 2076 WP_318825342.1 penicillin-binding protein PBP2B -
  V8N34_RS03055 (V8N34_03055) recR 632423..633019 (+) 597 WP_002935848.1 recombination mediator RecR -
  V8N34_RS03060 (V8N34_03060) - 633124..634170 (+) 1047 WP_024393198.1 D-alanine--D-alanine ligase -
  V8N34_RS03065 (V8N34_03065) - 634257..634637 (+) 381 WP_053867004.1 OsmC family protein -
  V8N34_RS03070 (V8N34_03070) murF 634766..636127 (+) 1362 WP_074389307.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  V8N34_RS03075 (V8N34_03075) - 636218..636916 (+) 699 WP_105112789.1 TIGR02206 family membrane protein -
  V8N34_RS03080 (V8N34_03080) - 636947..639283 (-) 2337 WP_318825341.1 cation-translocating P-type ATPase -
  V8N34_RS03085 (V8N34_03085) - 639520..641064 (+) 1545 WP_002935863.1 peptide chain release factor 3 -
  V8N34_RS03090 (V8N34_03090) - 641438..642241 (-) 804 WP_024384960.1 peptidylprolyl isomerase -
  V8N34_RS03095 (V8N34_03095) - 642384..642737 (+) 354 WP_002935873.1 DUF2500 domain-containing protein -
  V8N34_RS03100 (V8N34_03100) - 642822..643199 (+) 378 WP_172060025.1 VOC family protein -
  V8N34_RS03105 (V8N34_03105) - 643200..643745 (+) 546 WP_172077161.1 hypothetical protein -
  V8N34_RS03110 (V8N34_03110) - 643902..644891 (+) 990 WP_172060029.1 substrate-binding domain-containing protein -
  V8N34_RS03115 (V8N34_03115) - 645046..645966 (+) 921 WP_024379864.1 ABC transporter permease subunit -
  V8N34_RS03120 (V8N34_03120) - 645976..646863 (+) 888 WP_023369721.1 carbohydrate ABC transporter permease -
  V8N34_RS03125 (V8N34_03125) - 647118..648728 (+) 1611 WP_172060031.1 ABC transporter substrate-binding protein -
  V8N34_RS03130 (V8N34_03130) - 648746..650104 (+) 1359 WP_172060033.1 sucrose-6-phosphate hydrolase -
  V8N34_RS03135 (V8N34_03135) - 650230..652599 (+) 2370 WP_318825340.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29687.77 Da        Isoelectric Point: 5.7755

>NTDB_id=961503 V8N34_RS03015 WP_029172537.1 623543..624346(+) (vicX) [Streptococcus suis strain YA]
MIGKGFNYSILASGSSGNCFYLETDRKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=961503 V8N34_RS03015 WP_029172537.1 623543..624346(+) (vicX) [Streptococcus suis strain YA]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAGAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAATCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S6JK27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772