Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WF513_RS14630 Genome accession   NZ_CP149803
Coordinates   3079184..3080521 (+) Length   445 a.a.
NCBI ID   WP_339080118.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3080672..3089419 3079184..3080521 flank 151


Gene organization within MGE regions


Location: 3079184..3089419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WF513_RS14630 (WF513_14630) pilR 3079184..3080521 (+) 1338 WP_339080118.1 sigma-54 dependent transcriptional regulator Regulator
  WF513_RS14635 (WF513_14635) thiO 3080672..3081790 (-) 1119 WP_339080119.1 glycine oxidase ThiO -
  WF513_RS14640 (WF513_14640) - 3081861..3082382 (+) 522 WP_339080120.1 GspH/FimT family protein -
  WF513_RS14645 (WF513_14645) pilV 3083046..3083621 (+) 576 WP_339080121.1 type IV pilus modification protein PilV -
  WF513_RS14650 (WF513_14650) - 3083618..3084445 (+) 828 WP_339080122.1 PilW family protein -
  WF513_RS14655 (WF513_14655) - 3084454..3084963 (+) 510 WP_339080123.1 PilX N-terminal domain-containing pilus assembly protein -
  WF513_RS14660 (WF513_14660) - 3084974..3085309 (+) 336 WP_339080124.1 hypothetical protein -
  WF513_RS14665 (WF513_14665) - 3085325..3089419 (+) 4095 WP_339080125.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49807.24 Da        Isoelectric Point: 5.6283

>NTDB_id=961469 WF513_RS14630 WP_339080118.1 3079184..3080521(+) (pilR) [Pseudomonas sp. TMP9]
MTRQRALIVDDEPDIRELLEITLGRMKIDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHILQRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVAAALRLRSADGEELPVDSRLLGESPPMKTLRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGSRGEQPFVPVNCGAIPTELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRTVGGQQEVIVDVRILCATHKDLAAEVAAERFRQDLYYRLNVIELRVPALRERREDIALLADSM
LKRLAEGTGISAAKLDEEALEKLKSYRFPGNVRELENMLERAYTLCEDDRISASDLRLADCSPTNESGETSLAQVDNLED
HLEAIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=961469 WF513_RS14630 WP_339080118.1 3079184..3080521(+) (pilR) [Pseudomonas sp. TMP9]
ATGACCCGCCAGAGAGCCCTGATCGTCGATGACGAACCCGATATTCGCGAACTCCTGGAAATCACCCTAGGCCGAATGAA
AATCGACACCCGCAGCGCACGCAACGTCAAAGAAGCCCGCGAATGGCTGGCCAAAGAGCCGTTTGATCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACTGGCCTGGAGTTGGTGCAGCACATCTTGCAACGCCATCCGCAGGTGCCGGTGGCAATG
ATCACCGCCTATGGCAGCCTCGACACCGCCATCAACGCCTTAAAAGCCGGCGCATTCGACTTCCTAACCAAGCCCGTCGA
CCTCACACGCTTGCGCGAACTTGTCGCCGCCGCTCTGCGCCTGCGCAGCGCCGATGGCGAAGAGCTGCCAGTGGACAGCC
GCCTGCTTGGCGAATCGCCACCGATGAAGACCTTGCGCAAACAAATCCTCAAACTGGCTCGCAGCCAAGCCCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCTCGCCTGATCCACGAACAAGGCTCGCGCGGCGAACAACCGTT
TGTGCCGGTCAACTGCGGCGCCATTCCGACCGAGTTGATGGAAAGTGAGTTTTTCGGCCACAAAAAAGGCAGCTTTACCG
GCGCCATCGAAGACAAACAAGGCCTGTTCCAGGCAGCCAATGGCGGCACGCTGTTCCTTGATGAGGTCGCCGATCTGCCA
CTGCCGATGCAGGTCAAACTGCTACGCGCCATCCAGGAAAAAGCCGTGCGCACGGTGGGCGGCCAACAGGAAGTCATCGT
CGATGTGCGCATCCTCTGCGCCACCCATAAAGACTTGGCCGCAGAAGTCGCCGCTGAGCGCTTCCGCCAAGACCTTTACT
ACCGCCTTAACGTCATTGAACTGCGCGTGCCTGCCCTGCGCGAGCGCCGTGAAGACATCGCCCTACTCGCCGACAGCATG
CTCAAGCGCCTGGCCGAAGGCACCGGCATAAGCGCCGCCAAGCTGGATGAAGAGGCACTGGAAAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGTGCCTATACCCTGTGTGAAGACGACCGCATCAGCGCCA
GCGACCTCCGCTTAGCCGATTGCAGCCCCACCAATGAAAGCGGCGAAACCAGCCTCGCACAGGTCGACAATTTAGAAGAC
CACCTAGAAGCCATCGAGCGTAAATTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCCGCCGCGCAACG
CCTAGGCCTAAGCTTCCGCTCGATGCGCTATCGCCTGAAAAAACTCGGCATTGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

84.719

100

0.847
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515
  luxO Vibrio cholerae strain A1552

38.789

100

0.389