Detailed information NTG0961453

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: WF513_RS06500
• Genome accession: NZ_CP149803
• Coordinates: 1373618..1375828 (+)
• Length: 736 a.a.
• NCBI ID: WP_339083450.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TMP9
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1368618..1380828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WF513_RS06470 (WF513_06470)	-	1368694..1368996 (-)	303	WP_339082543.1	phosphodiesterase	-
WF513_RS06475 (WF513_06475)	-	1369009..1369590 (-)	582	WP_339082545.1	PilZ domain-containing protein	-
WF513_RS06480 (WF513_06480)	-	1369685..1370935 (+)	1251	WP_339082547.1	lipoprotein-releasing ABC transporter permease subunit	-
WF513_RS06485 (WF513_06485)	lolD	1370958..1371641 (+)	684	WP_339083448.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
WF513_RS06490 (WF513_06490)	-	1371641..1372885 (+)	1245	WP_339082549.1	lipoprotein-releasing ABC transporter permease subunit	-
WF513_RS06495 (WF513_06495)	-	1372943..1373470 (-)	528	WP_339082551.1	DUF2062 domain-containing protein	-
WF513_RS06500 (WF513_06500)	comA	1373618..1375828 (+)	2211	WP_339083450.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
WF513_RS06505 (WF513_06505)	exbB	1375901..1376533 (+)	633	WP_339082553.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
WF513_RS06510 (WF513_06510)	-	1376530..1376958 (+)	429	WP_322948974.1	biopolymer transporter ExbD	-
WF513_RS06515 (WF513_06515)	lpxK	1376972..1377973 (+)	1002	WP_339082557.1	tetraacyldisaccharide 4'-kinase	-
WF513_RS06520 (WF513_06520)	-	1378035..1378220 (+)	186	WP_339082559.1	Trm112 family protein	-
WF513_RS06525 (WF513_06525)	kdsB	1378221..1378985 (+)	765	WP_339082560.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
WF513_RS06530 (WF513_06530)	-	1378985..1379449 (+)	465	WP_339082562.1	low molecular weight protein-tyrosine-phosphatase	-
WF513_RS06535 (WF513_06535)	murB	1379446..1380480 (+)	1035	WP_339082564.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79435.44 Da
• Isoelectric Point: 9.5701

>NTDB_id=961453 WF513_RS06500 WP_339083450.1 1373618..1375828(+) (comA) [Pseudomonas sp. TMP9]
MFALLAGLLLLRFLPALPPLWLLILFPIAGLLLLPFRSYPIALFLFGFTWACVSAQWALDDRLAPSVDARTLWLQGQVVG
LPEVSGGVVRFELEQAVSRRELLPKRLRLSWYGGPAVHAGETWRLAVRLKRPHGLVNPQAFDYEAWLLTQRIGATGTVKS
GELLTPASGTGAWRDRLRQHLLATPAHGREGALAALVLGDGSGLSTADWQVLQNTGTVHLMVISGQHIGLLATLLYSLVA
GLARVGGWPRSWPWLPCACVLAFSGALAYGLLAGFEVPVQRACVMVGLVLLWRWRFRHLGVGLPVLLALLAVLLLEPLAS
LQPGFWLSFGAVALLILIFSGRLGVWPWWGTLLRAQWAMAIGLLPLLLALGLPVSASGPLANLVAVPVIGLLVVPLALLG
TLLLPVPGVGATLIGVAGWVLHLMFMLLSQLSVWLPAWLPSALPFWAWLLVALGALVLLLPAALPMRSLGALLLLPLLFS
PQQRPEYGRAEVWLLDVGQGLAVLVRTQQHDLLYDAGPRFGEFDTGERVVLPSLRALDVRGLDLLLLSHADNDHAGGAAA
IKRGLPVSRVVSGEPDNVAHSLQAQACKSEQWQWDGVAFSTWQWAGATDGNQASCVLLVEANGERLWLTGDIDSHAERAL
LNSTLLMPAQWLLAPHHGSRSSSSAALLAQVKPAAVLISRGAHNAFGHPHADVMGRYEAVAARAYDTAVQGALRIRLGAF
EPAQGLRNHARFWREK

Nucleotide

• Length: 2211 bp

>NTDB_id=961453 WF513_RS06500 WP_339083450.1 1373618..1375828(+) (comA) [Pseudomonas sp. TMP9]
ATGTTTGCGTTATTGGCTGGGCTGCTGCTGTTACGCTTTCTTCCGGCCTTGCCGCCGTTGTGGCTGCTGATCCTCTTCCC
GATAGCTGGGCTGCTGCTGCTGCCGTTTCGCAGCTACCCCATCGCGTTATTCCTCTTCGGCTTTACTTGGGCTTGTGTGT
CAGCGCAGTGGGCGCTGGATGACCGCTTGGCGCCCTCAGTGGATGCCCGCACTCTCTGGCTGCAGGGGCAAGTGGTGGGC
CTGCCTGAGGTCAGTGGCGGTGTGGTGCGGTTCGAGCTGGAGCAGGCGGTTTCTCGCCGCGAGCTATTGCCCAAGCGTTT
ACGCCTCTCGTGGTATGGCGGGCCAGCTGTGCATGCGGGTGAGACGTGGCGCTTAGCGGTGCGCCTCAAACGTCCCCATG
GGTTGGTCAACCCGCAGGCCTTTGATTATGAAGCTTGGTTATTGACGCAGCGAATCGGGGCAACGGGGACGGTGAAAAGT
GGCGAGTTGCTGACCCCCGCTAGCGGGACGGGTGCGTGGCGTGACCGCTTGCGTCAGCACCTACTCGCCACTCCGGCGCA
TGGTCGTGAAGGCGCTTTGGCGGCCTTGGTACTGGGCGATGGTTCGGGATTATCCACGGCAGACTGGCAGGTTCTGCAAA
ACACTGGAACGGTGCACTTAATGGTGATCTCCGGCCAGCATATCGGTCTGTTAGCGACGCTTTTATATAGTCTGGTTGCT
GGTTTAGCGCGTGTTGGGGGGTGGCCGCGCAGTTGGCCTTGGTTGCCCTGCGCCTGTGTCTTGGCGTTTAGCGGTGCACT
GGCTTACGGCCTGCTGGCAGGTTTTGAAGTGCCGGTGCAGCGCGCCTGTGTGATGGTCGGCTTGGTGCTGCTGTGGCGCT
GGCGTTTTCGTCATTTGGGCGTGGGCTTGCCCGTGTTGTTGGCACTGCTAGCGGTGTTGCTGTTGGAGCCGTTGGCCAGT
TTGCAACCAGGGTTCTGGTTATCTTTTGGCGCAGTGGCGCTGCTTATTCTGATTTTTAGTGGCCGCTTGGGTGTTTGGCC
TTGGTGGGGCACTTTACTGCGAGCGCAGTGGGCCATGGCGATAGGGTTGCTGCCGTTATTGCTGGCGCTCGGCTTACCGG
TAAGTGCCAGCGGGCCGCTGGCCAACTTAGTGGCAGTGCCTGTAATCGGCTTGTTGGTGGTACCGCTGGCATTACTCGGC
ACGCTGCTGCTGCCCGTGCCTGGGGTGGGGGCTACCTTGATCGGGGTCGCGGGCTGGGTGCTGCATCTGATGTTTATGCT
GCTCAGCCAATTGTCTGTGTGGCTACCCGCGTGGTTGCCCAGTGCGCTGCCTTTTTGGGCGTGGCTGCTGGTGGCGCTGG
GTGCGCTGGTATTGCTTTTGCCCGCAGCGCTGCCCATGCGCAGCTTAGGTGCGTTGCTGCTATTGCCGTTGTTATTTAGC
CCGCAACAACGTCCCGAATATGGCCGGGCTGAGGTGTGGCTGTTGGACGTCGGCCAAGGCTTGGCCGTGCTGGTGCGCAC
CCAGCAGCATGATTTGCTGTATGACGCGGGTCCGCGGTTTGGTGAGTTCGATACGGGTGAGCGGGTGGTGTTGCCATCCT
TACGCGCACTGGATGTGCGTGGGCTTGATCTGTTGTTGCTCAGCCATGCCGACAACGATCATGCCGGTGGCGCTGCCGCC
ATCAAGCGTGGCTTACCTGTCAGTCGGGTGGTCAGTGGTGAACCCGATAACGTAGCGCATTCGCTGCAGGCCCAGGCCTG
TAAATCTGAGCAGTGGCAATGGGACGGAGTTGCCTTCAGCACTTGGCAATGGGCCGGTGCAACCGATGGTAACCAAGCGT
CTTGCGTATTGCTGGTAGAGGCCAATGGTGAGCGTCTGTGGTTGACTGGAGACATCGACAGTCATGCCGAGCGCGCTTTG
CTCAACAGTACTTTACTGATGCCGGCACAGTGGTTGCTAGCGCCGCATCATGGCAGCCGTAGCTCGTCTTCTGCTGCACT
ACTGGCGCAGGTTAAACCGGCCGCAGTGTTGATTTCTCGTGGCGCGCACAATGCCTTTGGTCATCCGCATGCTGACGTCA
TGGGGCGCTATGAGGCTGTTGCGGCGCGAGCTTATGACACCGCCGTGCAGGGTGCGCTGCGGATTCGCCTCGGCGCATTC
GAGCCCGCACAGGGTTTGCGTAATCACGCACGCTTTTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-677)

• Competence protein (Competence) (196-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.109	97.418	0.644
comA	Ralstonia pseudosolanacearum GMI1000	33.216	100	0.385