Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WF513_RS06505 Genome accession   NZ_CP149803
Coordinates   1375901..1376533 (+) Length   210 a.a.
NCBI ID   WP_339082553.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370901..1381533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WF513_RS06485 (WF513_06485) lolD 1370958..1371641 (+) 684 WP_339083448.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  WF513_RS06490 (WF513_06490) - 1371641..1372885 (+) 1245 WP_339082549.1 lipoprotein-releasing ABC transporter permease subunit -
  WF513_RS06495 (WF513_06495) - 1372943..1373470 (-) 528 WP_339082551.1 DUF2062 domain-containing protein -
  WF513_RS06500 (WF513_06500) comA 1373618..1375828 (+) 2211 WP_339083450.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WF513_RS06505 (WF513_06505) exbB 1375901..1376533 (+) 633 WP_339082553.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WF513_RS06510 (WF513_06510) - 1376530..1376958 (+) 429 WP_322948974.1 biopolymer transporter ExbD -
  WF513_RS06515 (WF513_06515) lpxK 1376972..1377973 (+) 1002 WP_339082557.1 tetraacyldisaccharide 4'-kinase -
  WF513_RS06520 (WF513_06520) - 1378035..1378220 (+) 186 WP_339082559.1 Trm112 family protein -
  WF513_RS06525 (WF513_06525) kdsB 1378221..1378985 (+) 765 WP_339082560.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WF513_RS06530 (WF513_06530) - 1378985..1379449 (+) 465 WP_339082562.1 low molecular weight protein-tyrosine-phosphatase -
  WF513_RS06535 (WF513_06535) murB 1379446..1380480 (+) 1035 WP_339082564.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22831.03 Da        Isoelectric Point: 9.1188

>NTDB_id=961454 WF513_RS06505 WP_339082553.1 1375901..1376533(+) (exbB) [Pseudomonas sp. TMP9]
MWELVKAGGWIMLPIILCSIAAAGIIAERLWTLRPSRITPPNLLGQVWKWIKEKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAGLLASGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDLGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=961454 WF513_RS06505 WP_339082553.1 1375901..1376533(+) (exbB) [Pseudomonas sp. TMP9]
GTGTGGGAACTGGTAAAAGCTGGCGGCTGGATCATGCTGCCGATCATTCTGTGCTCCATCGCTGCGGCCGGCATTATTGC
CGAGCGCCTATGGACGCTGCGGCCGAGCCGCATCACCCCACCCAATCTGCTCGGGCAGGTATGGAAGTGGATCAAAGAGA
AAAAACTGAATAACCAAAAGCTTAAAGAGCTGCGCGCGAACTCGCCGCTGGGGCAAATTCTTGCTGCTGGCCTGGCTAAC
TCCAAACACGGTCGCGAGATCATGAAGGAGTGCATTCAGGAAGCTGCCGCTCGAGTCGTTCATGACTTAGAGCGCTATCT
CAATGCGCTTGGCACCATCGCCGGCATTGCGCCGCTGCTGGGTTTGCTCGGCACCGTTCTGGGCATGATCGAAATTTTCA
GCTCCTTTATGGGTTCCGGTATGGCCAACGCGGGTTTACTGGCCAGCGGTATTTCCAAGGCGCTGATCACCACCGCAGCA
GGTCTGATGGTGGCCATTCCTGCCTTGTTCTTTCACCGCTACCTGCAGCGCAGGGTTGATGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGATTCGCCTGGTTGAAGTGGTACAGGGCGATCGTGATGTTGATTTGGGTGAGGATAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90.952

100

0.91