Detailed information NTG0096119

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: AABA16_RS09240
• Genome accession: NZ_AP028610
• Coordinates: 1795682..1796581 (-)
• Length: 299 a.a.
• NCBI ID: WP_000904834.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep5
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1790682..1801581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA16_RS09215 (TKY124516_18050)	rsmA	1790919..1791791 (-)	873	WP_001216878.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
AABA16_RS09220	-	1792042..1792323 (-)	282	Protein_1803	hypothetical protein	-
AABA16_RS09225 (TKY124516_18070)	-	1792316..1792957 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
AABA16_RS09230 (TKY124516_18080)	-	1792959..1794989 (-)	2031	WP_000825268.1	bacteriocin-associated integral membrane family protein	-
AABA16_RS09235 (TKY124516_18090)	-	1795066..1795362 (-)	297	WP_000815394.1	lactococcin 972 family bacteriocin	-
AABA16_RS09240 (TKY124516_18100)	comR	1795682..1796581 (-)	900	WP_000904834.1	helix-turn-helix transcriptional regulator	Regulator
AABA16_RS09245 (TKY124516_18110)	rnmV	1796653..1797213 (-)	561	WP_000664448.1	ribonuclease M5	-
AABA16_RS09250 (TKY124516_18120)	-	1797213..1797986 (-)	774	WP_000575594.1	TatD family hydrolase	-
AABA16_RS09255 (TKY124516_18130)	-	1798291..1799184 (-)	894	WP_000226484.1	DUF1542 domain-containing protein	-
AABA16_RS09260 (TKY124516_18140)	rpmH	1799468..1799602 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
AABA16_RS09265 (TKY124516_18150)	-	1799747..1800961 (-)	1215	WP_000666469.1	pyridoxal phosphate-dependent aminotransferase	-
AABA16_RS09270	-	1801117..1801410 (-)	294	WP_000977374.1	hypothetical protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35263.10 Da
• Isoelectric Point: 4.9762

>NTDB_id=96119 AABA16_RS09240 WP_000904834.1 1795682..1796581(-) (comR) [Streptococcus pneumoniae strain Sep5]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=96119 AABA16_RS09240 WP_000904834.1 1795682..1796581(-) (comR) [Streptococcus pneumoniae strain Sep5]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	37.755	98.328	0.371
comR	Streptococcus suis P1/7	38.144	97.324	0.371
comR	Streptococcus suis 05ZYH33	38.144	97.324	0.371
comR	Streptococcus suis D9	36.12	100	0.361