Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | WIS47_RS02595 | Genome accession | NZ_CP149741 |
| Coordinates | 562024..563070 (-) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain Z1322HCD0068 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 516685..587066 | 562024..563070 | within | 0 |
Gene organization within MGE regions
Location: 516685..587066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WIS47_RS02380 (WIS47_02380) | - | 519572..520558 (-) | 987 | WP_021359130.1 | phage tail protein | - |
| WIS47_RS02385 (WIS47_02385) | - | 520559..521257 (-) | 699 | WP_003428156.1 | putative phage tail protein | - |
| WIS47_RS02390 (WIS47_02390) | - | 521254..522306 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| WIS47_RS02395 (WIS47_02395) | - | 522299..522727 (-) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| WIS47_RS02400 (WIS47_02400) | - | 522727..523053 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| WIS47_RS02405 (WIS47_02405) | - | 523069..524598 (-) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| WIS47_RS02410 (WIS47_02410) | - | 524880..525302 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| WIS47_RS02415 (WIS47_02415) | - | 525302..527755 (-) | 2454 | WP_074139983.1 | hypothetical protein | - |
| WIS47_RS02420 (WIS47_02420) | - | 527755..527922 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| WIS47_RS02425 (WIS47_02425) | - | 527949..528395 (-) | 447 | WP_021366507.1 | phage XkdN-like family protein | - |
| WIS47_RS02430 (WIS47_02430) | - | 528533..528961 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| WIS47_RS02435 (WIS47_02435) | - | 528975..530039 (-) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| WIS47_RS02440 (WIS47_02440) | - | 530044..530487 (-) | 444 | WP_074139984.1 | DUF6838 family protein | - |
| WIS47_RS02445 (WIS47_02445) | - | 530736..531176 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| WIS47_RS02450 (WIS47_02450) | - | 531280..531477 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| WIS47_RS02455 (WIS47_02455) | - | 531646..531966 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| WIS47_RS02460 (WIS47_02460) | - | 532048..532554 (+) | 507 | WP_003428186.1 | hypothetical protein | - |
| WIS47_RS02465 (WIS47_02465) | - | 533255..534010 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| WIS47_RS02470 (WIS47_02470) | - | 534153..534581 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| WIS47_RS02475 (WIS47_02475) | - | 535002..535202 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| WIS47_RS02480 (WIS47_02480) | - | 535385..536539 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| WIS47_RS02485 (WIS47_02485) | - | 536790..537611 (+) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| WIS47_RS02490 (WIS47_02490) | - | 537687..539075 (-) | 1389 | WP_074139927.1 | two-component system sensor histidine kinase | - |
| WIS47_RS02495 (WIS47_02495) | - | 539210..539968 (-) | 759 | WP_074139928.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| WIS47_RS02500 (WIS47_02500) | - | 539970..540686 (-) | 717 | WP_074139929.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| WIS47_RS02505 (WIS47_02505) | - | 540688..541395 (-) | 708 | WP_021362501.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| WIS47_RS02510 (WIS47_02510) | - | 541511..542047 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| WIS47_RS02515 (WIS47_02515) | - | 542149..543219 (-) | 1071 | WP_074139930.1 | DUF4097 family beta strand repeat-containing protein | - |
| WIS47_RS02520 (WIS47_02520) | - | 543212..544270 (-) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| WIS47_RS02525 (WIS47_02525) | - | 544257..544589 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| WIS47_RS02530 (WIS47_02530) | - | 544788..545909 (+) | 1122 | WP_003438374.1 | glycosyltransferase | - |
| WIS47_RS02535 (WIS47_02535) | - | 546037..547935 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| WIS47_RS02540 (WIS47_02540) | - | 548250..549026 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| WIS47_RS02545 (WIS47_02545) | - | 549118..549870 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| WIS47_RS02550 (WIS47_02550) | galT | 550031..550981 (-) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| WIS47_RS02555 (WIS47_02555) | - | 551366..552562 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| WIS47_RS02560 (WIS47_02560) | - | 552897..553349 (-) | 453 | WP_003419561.1 | MarR family transcriptional regulator | - |
| WIS47_RS02565 (WIS47_02565) | purB | 553661..555106 (-) | 1446 | WP_021363439.1 | adenylosuccinate lyase | - |
| WIS47_RS02570 (WIS47_02570) | - | 555250..556158 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| WIS47_RS02575 (WIS47_02575) | - | 556415..557239 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| WIS47_RS02580 (WIS47_02580) | lepB | 557279..557809 (+) | 531 | WP_009896231.1 | signal peptidase I | - |
| WIS47_RS02585 (WIS47_02585) | - | 557891..559672 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| WIS47_RS02590 (WIS47_02590) | rny | 560307..561848 (-) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| WIS47_RS02595 (WIS47_02595) | recA | 562024..563070 (-) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| WIS47_RS02600 (WIS47_02600) | pgsA | 563358..563900 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| WIS47_RS02605 (WIS47_02605) | rimO | 563887..565221 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| WIS47_RS02610 (WIS47_02610) | mnmH | 565215..566273 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| WIS47_RS02615 (WIS47_02615) | - | 566276..568687 (-) | 2412 | WP_003438328.1 | DNA translocase FtsK | - |
| WIS47_RS02620 (WIS47_02620) | - | 568810..569544 (-) | 735 | WP_003428224.1 | ATP-dependent Clp protease proteolytic subunit | - |
| WIS47_RS02625 (WIS47_02625) | dapG | 569657..570880 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| WIS47_RS02630 (WIS47_02630) | - | 570890..571135 (-) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| WIS47_RS02635 (WIS47_02635) | - | 571170..572417 (-) | 1248 | WP_003438321.1 | pitrilysin family protein | - |
| WIS47_RS02640 (WIS47_02640) | - | 572575..573318 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| WIS47_RS02645 (WIS47_02645) | pnp | 573584..575695 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| WIS47_RS02650 (WIS47_02650) | - | 575820..576665 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| WIS47_RS02655 (WIS47_02655) | rpsO | 576905..577162 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| WIS47_RS02660 (WIS47_02660) | - | 577266..578195 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WIS47_RS02665 (WIS47_02665) | truB | 578326..579231 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| WIS47_RS02670 (WIS47_02670) | - | 579244..579549 (-) | 306 | Protein_532 | DHHA1 domain-containing protein | - |
| WIS47_RS02675 (WIS47_02675) | tnpB | 579667..580785 (-) | 1119 | WP_077723362.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| WIS47_RS02680 (WIS47_02680) | - | 581434..582111 (-) | 678 | Protein_534 | DHH family phosphoesterase | - |
| WIS47_RS02685 (WIS47_02685) | rbfA | 582092..582472 (-) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| WIS47_RS02690 (WIS47_02690) | infB | 582515..584455 (-) | 1941 | WP_074140027.1 | translation initiation factor IF-2 | - |
| WIS47_RS02695 (WIS47_02695) | - | 584477..584788 (-) | 312 | WP_003419470.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| WIS47_RS02700 (WIS47_02700) | - | 584778..585059 (-) | 282 | WP_003419469.1 | YlxR family protein | - |
| WIS47_RS02705 (WIS47_02705) | nusA | 585066..586220 (-) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| WIS47_RS02710 (WIS47_02710) | rimP | 586250..586711 (-) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=961122 WIS47_RS02595 WP_003428218.1 562024..563070(-) (recA) [Clostridioides difficile strain Z1322HCD0068]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=961122 WIS47_RS02595 WP_003428218.1 562024..563070(-) (recA) [Clostridioides difficile strain Z1322HCD0068]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.