Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   WIR85_RS15925 Genome accession   NZ_CP149688
Coordinates   3475871..3476578 (-) Length   235 a.a.
NCBI ID   WP_021366255.1    Uniprot ID   A0A069AVD9
Organism   Clostridioides difficile strain Z1322PCD0039     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470871..3481578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR85_RS15910 (WIR85_15910) - 3471151..3471621 (-) 471 WP_009888463.1 VOC family protein -
  WIR85_RS15915 (WIR85_15915) - 3472361..3472750 (-) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  WIR85_RS15920 (WIR85_15920) - 3474420..3475826 (-) 1407 WP_074140180.1 HAMP domain-containing sensor histidine kinase -
  WIR85_RS15925 (WIR85_15925) scnR 3475871..3476578 (-) 708 WP_021366255.1 response regulator transcription factor Regulator
  WIR85_RS15930 (WIR85_15930) - 3476740..3477663 (+) 924 WP_025985748.1 ATP-binding cassette domain-containing protein -
  WIR85_RS15935 (WIR85_15935) - 3477663..3478424 (+) 762 WP_003439185.1 ABC transporter permease -
  WIR85_RS15940 (WIR85_15940) - 3478436..3479173 (+) 738 WP_074140179.1 ABC transporter permease -
  WIR85_RS15945 (WIR85_15945) - 3480090..3480359 (+) 270 WP_003426848.1 DUF3795 domain-containing protein -
  WIR85_RS15950 (WIR85_15950) cdd1 3480577..3480822 (-) 246 WP_009888450.1 protein Cdd1 -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26730.20 Da        Isoelectric Point: 6.1479

>NTDB_id=960738 WIR85_RS15925 WP_021366255.1 3475871..3476578(-) (scnR) [Clostridioides difficile strain Z1322PCD0039]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKEGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=960738 WIR85_RS15925 WP_021366255.1 3475871..3476578(-) (scnR) [Clostridioides difficile strain Z1322PCD0039]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGAAGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A069AVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379