Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACI3MY_RS24405 Genome accession   NZ_CP173539
Coordinates   4850805..4851437 (+) Length   210 a.a.
NCBI ID   WP_000242750.1    Uniprot ID   -
Organism   Escherichia coli strain 98207     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4845805..4856437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MY_RS24380 (ACI3MY_24390) yheS 4845974..4847887 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  ACI3MY_RS24385 (ACI3MY_24395) yheT 4847887..4848909 (+) 1023 WP_000057405.1 hydrolase -
  ACI3MY_RS24390 (ACI3MY_24400) yheU 4848903..4849121 (+) 219 WP_000907085.1 YheU family protein -
  ACI3MY_RS24395 (ACI3MY_24405) prkB 4849175..4850044 (+) 870 WP_001275838.1 phosphoribulokinase -
  ACI3MY_RS24400 (ACI3MY_24410) yhfA 4850099..4850503 (-) 405 WP_001148908.1 OsmC family protein -
  ACI3MY_RS24405 (ACI3MY_24415) crp 4850805..4851437 (+) 633 WP_000242750.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACI3MY_RS24410 (ACI3MY_24420) yhfK 4851488..4853578 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  ACI3MY_RS24415 (ACI3MY_24425) argD 4853645..4854865 (-) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  ACI3MY_RS24420 (ACI3MY_24430) pabA 4854951..4855514 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  ACI3MY_RS24425 (ACI3MY_24435) fic 4855546..4856148 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  ACI3MY_RS24430 (ACI3MY_24440) yhfG 4856138..4856305 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23698.46 Da        Isoelectric Point: 7.8363

>NTDB_id=960419 ACI3MY_RS24405 WP_000242750.1 4850805..4851437(+) (crp) [Escherichia coli strain 98207]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=960419 ACI3MY_RS24405 WP_000242750.1 4850805..4851437(+) (crp) [Escherichia coli strain 98207]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGAC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

77.451

97.143

0.752
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467