Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WKI56_RS17405 Genome accession   NZ_CP149650
Coordinates   3430080..3430769 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain MJ02     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3425080..3435769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI56_RS17370 (WKI56_17370) - 3425278..3425760 (-) 483 WP_003151394.1 flagellar protein FlgN -
  WKI56_RS17375 (WKI56_17375) flgM 3425775..3426041 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WKI56_RS17380 (WKI56_17380) - 3426111..3426530 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  WKI56_RS17385 (WKI56_17385) comFC 3426604..3427293 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  WKI56_RS17390 (WKI56_17390) - 3427299..3427583 (-) 285 WP_017418816.1 competence protein ComFB -
  WKI56_RS17395 (WKI56_17395) comFA 3427641..3429026 (-) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  WKI56_RS17400 (WKI56_17400) - 3429134..3429982 (-) 849 WP_237586810.1 DegV family protein -
  WKI56_RS17405 (WKI56_17405) degU 3430080..3430769 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WKI56_RS17410 (WKI56_17410) degS 3430846..3432009 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  WKI56_RS17415 (WKI56_17415) - 3432232..3432879 (+) 648 WP_007614107.1 YigZ family protein -
  WKI56_RS17420 (WKI56_17420) - 3432884..3434071 (+) 1188 WP_339078402.1 LCP family protein -
  WKI56_RS17425 (WKI56_17425) - 3434171..3435247 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=960381 WKI56_RS17405 WP_003219701.1 3430080..3430769(-) (degU) [Bacillus velezensis strain MJ02]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=960381 WKI56_RS17405 WP_003219701.1 3430080..3430769(-) (degU) [Bacillus velezensis strain MJ02]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1