Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WKI56_RS17395 Genome accession   NZ_CP149650
Coordinates   3427641..3429026 (-) Length   461 a.a.
NCBI ID   WP_237586808.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422641..3434026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI56_RS17360 (WKI56_17360) flgL 3422816..3423733 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  WKI56_RS17365 (WKI56_17365) flgK 3423745..3425262 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  WKI56_RS17370 (WKI56_17370) - 3425278..3425760 (-) 483 WP_003151394.1 flagellar protein FlgN -
  WKI56_RS17375 (WKI56_17375) flgM 3425775..3426041 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WKI56_RS17380 (WKI56_17380) - 3426111..3426530 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  WKI56_RS17385 (WKI56_17385) comFC 3426604..3427293 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  WKI56_RS17390 (WKI56_17390) - 3427299..3427583 (-) 285 WP_017418816.1 competence protein ComFB -
  WKI56_RS17395 (WKI56_17395) comFA 3427641..3429026 (-) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  WKI56_RS17400 (WKI56_17400) - 3429134..3429982 (-) 849 WP_237586810.1 DegV family protein -
  WKI56_RS17405 (WKI56_17405) degU 3430080..3430769 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WKI56_RS17410 (WKI56_17410) degS 3430846..3432009 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  WKI56_RS17415 (WKI56_17415) - 3432232..3432879 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52610.03 Da        Isoelectric Point: 10.1919

>NTDB_id=960380 WKI56_RS17395 WP_237586808.1 3427641..3429026(-) (comFA) [Bacillus velezensis strain MJ02]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=960380 WKI56_RS17395 WP_237586808.1 3427641..3429026(-) (comFA) [Bacillus velezensis strain MJ02]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623