Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WKI54_RS20405 Genome accession   NZ_CP149648
Coordinates   3965408..3965743 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ04     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3960408..3970743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS20385 (WKI54_20385) gcvT 3961014..3962114 (-) 1101 WP_061890721.1 glycine cleavage system aminomethyltransferase GcvT -
  WKI54_RS20390 (WKI54_20390) - 3962538..3964208 (+) 1671 WP_257988702.1 DEAD/DEAH box helicase -
  WKI54_RS20395 (WKI54_20395) - 3964230..3965024 (+) 795 WP_014305407.1 YqhG family protein -
  WKI54_RS20400 (WKI54_20400) sinI 3965201..3965374 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  WKI54_RS20405 (WKI54_20405) sinR 3965408..3965743 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  WKI54_RS20410 (WKI54_20410) - 3965791..3966576 (-) 786 WP_017418136.1 TasA family protein -
  WKI54_RS20415 (WKI54_20415) - 3966641..3967225 (-) 585 WP_012117977.1 signal peptidase I -
  WKI54_RS20420 (WKI54_20420) tapA 3967197..3967868 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  WKI54_RS20425 (WKI54_20425) - 3968127..3968456 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  WKI54_RS20430 (WKI54_20430) - 3968497..3968676 (-) 180 WP_003153093.1 YqzE family protein -
  WKI54_RS20435 (WKI54_20435) comGG 3968733..3969110 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  WKI54_RS20440 (WKI54_20440) comGF 3969111..3969506 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  WKI54_RS20445 (WKI54_20445) comGE 3969520..3969834 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  WKI54_RS20450 (WKI54_20450) comGD 3969818..3970255 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  WKI54_RS20455 (WKI54_20455) comGC 3970245..3970553 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=960304 WKI54_RS20405 WP_003153104.1 3965408..3965743(+) (sinR) [Bacillus velezensis strain MJ04]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=960304 WKI54_RS20405 WP_003153104.1 3965408..3965743(+) (sinR) [Bacillus velezensis strain MJ04]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991