Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WKI54_RS04670 Genome accession   NZ_CP149648
Coordinates   865218..865907 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain MJ04     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 860218..870907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS04635 (WKI54_04635) - 860416..860898 (-) 483 WP_003151394.1 flagellar protein FlgN -
  WKI54_RS04640 (WKI54_04640) flgM 860913..861179 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WKI54_RS04645 (WKI54_04645) - 861249..861668 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  WKI54_RS04650 (WKI54_04650) comFC 861742..862431 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  WKI54_RS04655 (WKI54_04655) - 862437..862721 (-) 285 WP_017418816.1 competence protein ComFB -
  WKI54_RS04660 (WKI54_04660) comFA 862779..864164 (-) 1386 WP_339075853.1 DEAD/DEAH box helicase Machinery gene
  WKI54_RS04665 (WKI54_04665) - 864272..865120 (-) 849 WP_003151387.1 DegV family protein -
  WKI54_RS04670 (WKI54_04670) degU 865218..865907 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WKI54_RS04675 (WKI54_04675) degS 865984..867147 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  WKI54_RS04680 (WKI54_04680) - 867370..868017 (+) 648 WP_339075854.1 YigZ family protein -
  WKI54_RS04685 (WKI54_04685) - 868022..869215 (+) 1194 WP_128974134.1 LCP family protein -
  WKI54_RS04690 (WKI54_04690) - 869315..870391 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=960258 WKI54_RS04670 WP_003219701.1 865218..865907(-) (degU) [Bacillus velezensis strain MJ04]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=960258 WKI54_RS04670 WP_003219701.1 865218..865907(-) (degU) [Bacillus velezensis strain MJ04]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1