Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WKI52_RS13935 Genome accession   NZ_CP149646
Coordinates   2728953..2729732 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain MJ06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2723953..2734732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI52_RS13915 (WKI52_13915) trmFO 2724640..2725947 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WKI52_RS13920 (WKI52_13920) xerC 2726017..2726934 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  WKI52_RS13925 (WKI52_13925) hslV 2726950..2727495 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  WKI52_RS13930 (WKI52_13930) hslU 2727503..2728915 (+) 1413 WP_257986734.1 HslU--HslV peptidase ATPase subunit -
  WKI52_RS13935 (WKI52_13935) codY 2728953..2729732 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WKI52_RS13940 (WKI52_13940) flgB 2730086..2730475 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  WKI52_RS13945 (WKI52_13945) flgC 2730475..2730927 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  WKI52_RS13950 (WKI52_13950) fliE 2730938..2731258 (+) 321 WP_110085558.1 flagellar hook-basal body complex protein FliE -
  WKI52_RS13955 (WKI52_13955) fliF 2731301..2732911 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  WKI52_RS13960 (WKI52_13960) fliG 2732924..2733940 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  WKI52_RS13965 (WKI52_13965) fliH 2733933..2734688 (+) 756 WP_129093712.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=960221 WKI52_RS13935 WP_003154263.1 2728953..2729732(+) (codY) [Bacillus velezensis strain MJ06]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=960221 WKI52_RS13935 WP_003154263.1 2728953..2729732(+) (codY) [Bacillus velezensis strain MJ06]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471