Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHL52_RS13355 Genome accession   NZ_CP149576
Coordinates   2547873..2548208 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain DSM 10     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2542873..2553208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS13335 gcvT 2543465..2544553 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHL52_RS13340 yqhH 2544995..2546668 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHL52_RS13345 yqhG 2546689..2547483 (+) 795 WP_003230200.1 YqhG family protein -
  WHL52_RS13350 sinI 2547666..2547839 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHL52_RS13355 sinR 2547873..2548208 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHL52_RS13360 tasA 2548301..2549086 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHL52_RS13365 sipW 2549150..2549722 (-) 573 WP_003246088.1 signal peptidase I -
  WHL52_RS13370 tapA 2549706..2550467 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHL52_RS13375 yqzG 2550739..2551065 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHL52_RS13380 spoIIT 2551107..2551286 (-) 180 WP_003230176.1 YqzE family protein -
  WHL52_RS13385 comGG 2551357..2551731 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHL52_RS13390 comGF 2551732..2552115 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHL52_RS13395 comGE 2552141..2552488 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHL52_RS13400 comGD 2552472..2552903 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHL52_RS13405 comGC 2552893..2553189 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=959971 WHL52_RS13355 WP_003226345.1 2547873..2548208(+) (sinR) [Bacillus subtilis strain DSM 10]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=959971 WHL52_RS13355 WP_003226345.1 2547873..2548208(+) (sinR) [Bacillus subtilis strain DSM 10]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1