Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3NH_RS16125 Genome accession   NZ_CP173509
Coordinates   3349801..3350277 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 98215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3344801..3355277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3NH_RS16095 (ACI3NH_16100) - 3345301..3346185 (+) 885 WP_001116795.1 GTPase family protein -
  ACI3NH_RS16100 (ACI3NH_16105) - 3346388..3347068 (+) 681 WP_001282921.1 YafY family protein -
  ACI3NH_RS16105 (ACI3NH_16110) - 3347216..3347893 (+) 678 WP_001097302.1 hypothetical protein -
  ACI3NH_RS16110 (ACI3NH_16115) - 3347899..3348132 (+) 234 WP_001278293.1 DUF905 family protein -
  ACI3NH_RS16115 (ACI3NH_16120) - 3348222..3349040 (+) 819 WP_001175165.1 DUF932 domain-containing protein -
  ACI3NH_RS16120 (ACI3NH_16125) - 3349306..3349785 (+) 480 WP_057109541.1 antirestriction protein -
  ACI3NH_RS16125 (ACI3NH_16130) radC 3349801..3350277 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  ACI3NH_RS16130 (ACI3NH_16135) - 3350340..3350561 (+) 222 WP_000692341.1 DUF987 domain-containing protein -
  ACI3NH_RS16135 (ACI3NH_16140) - 3350724..3351092 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACI3NH_RS16140 (ACI3NH_16145) - 3351182..3351556 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  ACI3NH_RS16145 (ACI3NH_16150) - 3351556..3351759 (+) 204 WP_001398797.1 DUF5983 family protein -
  ACI3NH_RS16150 (ACI3NH_16155) - 3351784..3351978 (+) 195 WP_024181941.1 DUF957 domain-containing protein -
  ACI3NH_RS16155 (ACI3NH_16160) - 3352063..3352905 (+) 843 WP_022645115.1 DUF4942 domain-containing protein -
  ACI3NH_RS16160 (ACI3NH_16165) yghD 3353186..3353722 (-) 537 WP_000942785.1 GspM family type II secretion system protein YghD -
  ACI3NH_RS16165 (ACI3NH_16170) gspL 3353724..3354902 (-) 1179 WP_000094991.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=959974 ACI3NH_RS16125 WP_001186774.1 3349801..3350277(+) (radC) [Escherichia coli strain 98215]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=959974 ACI3NH_RS16125 WP_001186774.1 3349801..3350277(+) (radC) [Escherichia coli strain 98215]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399