Detailed information NTG0959854

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WDB70_RS01675
• Genome accession: NZ_CP149514
• Coordinates: 340003..340866 (+)
• Length: 287 a.a.
• NCBI ID: WP_406665974.1
• Uniprot ID: -
• Organism: Gallaecimonas sp. GXIMD1310 strain aegiceras
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 335003..345866

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDB70_RS01655 (WDB70_01655)	nadC	335453..336301 (-)	849	WP_406665966.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WDB70_RS01660 (WDB70_01660)	-	336556..336969 (+)	414	WP_406665968.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WDB70_RS01665 (WDB70_01665)	pilB	337039..338751 (+)	1713	WP_406665970.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WDB70_RS01670 (WDB70_01670)	pilC	338763..340001 (+)	1239	WP_406665972.1	type II secretion system F family protein	Machinery gene
WDB70_RS01675 (WDB70_01675)	pilD	340003..340866 (+)	864	WP_406665974.1	prepilin peptidase	Machinery gene
WDB70_RS01680 (WDB70_01680)	coaE	340859..341464 (+)	606	WP_406665976.1	dephospho-CoA kinase	-
WDB70_RS01685 (WDB70_01685)	zapD	341503..342234 (+)	732	WP_406665978.1	cell division protein ZapD	-
WDB70_RS01690 (WDB70_01690)	yacG	342245..342412 (+)	168	WP_406665980.1	DNA gyrase inhibitor YacG	-
WDB70_RS01695 (WDB70_01695)	ampD	342472..343008 (+)	537	WP_406665982.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
WDB70_RS01700 (WDB70_01700)	ampE	343005..343805 (+)	801	WP_406665984.1	regulatory signaling modulator protein AmpE	-
WDB70_RS01705 (WDB70_01705)	pdhR	343937..344716 (+)	780	WP_406665986.1	pyruvate dehydrogenase complex transcriptional repressor PdhR	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31517.32 Da
• Isoelectric Point: 7.6623

>NTDB_id=959854 WDB70_RS01675 WP_406665974.1 340003..340866(+) (pilD) [Gallaecimonas sp. GXIMD1310 strain aegiceras]
MLDNAIAFWGRDAVAFTALVLGLGLLVGSFLNVVIYRLPVMLTRRWQAESRELLELEQPASERFNLLLPHSHCPSCRAKV
AWYDNIPLLSWLLLRGKCRHCQTSIAVRYPLVELSCGLLSAVVAWHYGASSFTWAALLFTWVLLALTFIDADTMLLPDDL
TLPLLWGGLLLSLWGGLVSPAEAITGAVIGYLVLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGPWMLPQIILLSSLF
GAAWGIASALKKGNQPMPFGPFLAAAGWVALIWGQAINNWYLGLLSG

Nucleotide

• Length: 864 bp

>NTDB_id=959854 WDB70_RS01675 WP_406665974.1 340003..340866(+) (pilD) [Gallaecimonas sp. GXIMD1310 strain aegiceras]
TTGTTAGACAATGCCATTGCTTTTTGGGGCCGTGACGCAGTGGCGTTCACGGCCCTTGTCTTGGGGCTGGGGCTGCTGGT
CGGCAGCTTTCTGAATGTGGTGATTTACCGGCTGCCGGTAATGCTGACCCGGCGCTGGCAGGCGGAGAGCCGGGAACTAC
TGGAGCTGGAACAACCAGCCAGTGAGCGCTTTAATCTGTTGCTGCCCCACAGCCATTGCCCCAGCTGCCGTGCCAAAGTT
GCCTGGTACGACAACATTCCGCTGTTGAGCTGGCTGCTGCTGCGTGGTAAATGCCGCCACTGTCAAACATCAATCGCCGT
GCGTTACCCACTGGTAGAGCTGAGCTGTGGCTTGCTGTCGGCGGTGGTCGCCTGGCACTACGGCGCCAGCAGCTTCACCT
GGGCGGCGTTGCTCTTTACCTGGGTGTTGTTGGCACTGACCTTTATCGATGCTGACACCATGCTGCTGCCGGACGATTTA
ACCTTGCCCTTGCTGTGGGGGGGGTTGCTGCTGAGTCTCTGGGGCGGGCTGGTCAGCCCGGCAGAGGCGATAACAGGAGC
GGTGATAGGGTATCTGGTTCTGTGGTCGGTGTATTGGGCCTTCAAGTTACTGACCGGTAAAGAGGGTATGGGCTACGGCG
ATTTCAAGCTGTTAGCCGCACTGGGCGCCTGGCTTGGCCCCTGGATGTTGCCACAAATCATCTTGCTGTCTTCACTGTTC
GGGGCTGCCTGGGGTATTGCCAGCGCGCTGAAAAAAGGGAACCAGCCGATGCCTTTTGGCCCCTTCTTGGCGGCCGCTGG
CTGGGTTGCCTTGATCTGGGGGCAGGCCATTAACAACTGGTACCTGGGGCTGCTCAGTGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	55.755	96.864	0.54
pilD	Vibrio cholerae strain A1552	55.311	95.122	0.526
pilD	Acinetobacter baumannii D1279779	52.982	99.303	0.526
pilD	Acinetobacter nosocomialis M2	52.982	99.303	0.526
pilD	Neisseria gonorrhoeae MS11	51.698	92.334	0.477