Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WJ044_RS07775 Genome accession   NZ_CP149499
Coordinates   1524439..1524750 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CIP 702     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519439..1529750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ044_RS07755 (WJ044_07755) ctsE 1520308..1521867 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  WJ044_RS07760 (WJ044_07760) ctsX 1521857..1522444 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  WJ044_RS07765 (WJ044_07765) ctsP 1522448..1523056 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  WJ044_RS07770 (WJ044_07770) ctsD 1523049..1524461 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WJ044_RS07775 (WJ044_07775) ctsR 1524439..1524750 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  WJ044_RS07780 (WJ044_07780) nifJ 1524774..1528334 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WJ044_RS07785 (WJ044_07785) - 1528427..1529068 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=959709 WJ044_RS07775 WP_002862131.1 1524439..1524750(-) (ctsR) [Campylobacter jejuni strain CIP 702]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=959709 WJ044_RS07775 WP_002862131.1 1524439..1524750(-) (ctsR) [Campylobacter jejuni strain CIP 702]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99