Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   WJ062_RS00680 Genome accession   NZ_CP149486
Coordinates   104193..104627 (+) Length   144 a.a.
NCBI ID   WP_002987783.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain EMM113     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99193..109627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ062_RS00650 (WJ062_00640) - 100862..101227 (+) 366 WP_002986560.1 DUF1033 family protein -
  WJ062_RS00655 (WJ062_00645) comYA 101320..102258 (+) 939 WP_002987773.1 competence type IV pilus ATPase ComGA Machinery gene
  WJ062_RS00660 (WJ062_00650) comYB 102194..103228 (+) 1035 WP_223845212.1 competence type IV pilus assembly protein ComGB Machinery gene
  WJ062_RS00665 (WJ062_00655) comYC 103230..103556 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  WJ062_RS00670 (WJ062_00660) comGD 103531..103959 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  WJ062_RS00675 (WJ062_00665) comGE 103916..104200 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  WJ062_RS00680 (WJ062_00670) comYF 104193..104627 (+) 435 WP_002987783.1 competence type IV pilus minor pilin ComGF Machinery gene
  WJ062_RS00685 (WJ062_00675) comGG 104611..104937 (+) 327 WP_002987787.1 competence type IV pilus minor pilin ComGG -
  WJ062_RS00690 (WJ062_00680) comYH 105035..105988 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  WJ062_RS00695 (WJ062_00685) - 106047..107243 (+) 1197 WP_136119938.1 acetate kinase -
  WJ062_RS00700 (WJ062_00690) - 107430..107738 (+) 309 WP_011284425.1 hypothetical protein -
  WJ062_RS00705 (WJ062_00695) proC 107821..108591 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16585.23 Da        Isoelectric Point: 10.2064

>NTDB_id=959413 WJ062_RS00680 WP_002987783.1 104193..104627(+) (comYF) [Streptococcus pyogenes strain EMM113]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFCKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=959413 WJ062_RS00680 WP_002987783.1 104193..104627(+) (comYF) [Streptococcus pyogenes strain EMM113]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTCCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTACCTAGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTGCAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGATATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.079

96.528

0.493
  comYF Streptococcus mutans UA159

50.36

96.528

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

44.776

93.056

0.417
  comGF/cglF Streptococcus pneumoniae Rx1

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae D39

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae R6

43.609

92.361

0.403
  comGF/cglF Streptococcus pneumoniae TIGR4

43.609

92.361

0.403
  comGF/cglF Streptococcus mitis SK321

42.857

92.361

0.396