Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WDR05_RS16280 Genome accession   NZ_CP149444
Coordinates   3115457..3116101 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110457..3121101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS16245 (WDR05_16225) mrpB 3111649..3112080 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WDR05_RS16250 (WDR05_16230) mrpC 3112080..3112421 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WDR05_RS16255 (WDR05_16235) mrpD 3112414..3113895 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  WDR05_RS16260 (WDR05_16240) mrpE 3113901..3114377 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  WDR05_RS16265 (WDR05_16245) mrpF 3114377..3114661 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WDR05_RS16270 (WDR05_16250) mnhG 3114645..3115019 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  WDR05_RS16275 (WDR05_16255) yuxO 3115058..3115438 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  WDR05_RS16280 (WDR05_16260) comA 3115457..3116101 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WDR05_RS16285 (WDR05_16265) comP 3116182..3118494 (-) 2313 WP_069703660.1 histidine kinase Regulator
  WDR05_RS16290 (WDR05_16270) comX 3118510..3118731 (-) 222 WP_014480704.1 competence pheromone ComX -
  WDR05_RS16295 (WDR05_16275) - 3118733..3119596 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  WDR05_RS16300 (WDR05_16280) degQ 3119781..3119921 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WDR05_RS16305 (WDR05_16285) - 3120143..3120205 (+) 63 Protein_3145 hypothetical protein -
  WDR05_RS16310 (WDR05_16290) - 3120383..3120751 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=959145 WDR05_RS16280 WP_003220716.1 3115457..3116101(-) (comA) [Bacillus subtilis strain HC-9]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=959145 WDR05_RS16280 WP_003220716.1 3115457..3116101(-) (comA) [Bacillus subtilis strain HC-9]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1