Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACI3L8_RS06410 Genome accession   NZ_CP173391
Coordinates   1423963..1426044 (+) Length   693 a.a.
NCBI ID   WP_017189969.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1418963..1431044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS06390 (ACI3L8_06390) gmk 1419674..1420297 (+) 624 WP_005430186.1 guanylate kinase -
  ACI3L8_RS06395 (ACI3L8_06395) rpoZ 1420461..1420733 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  ACI3L8_RS06400 (ACI3L8_06400) spoT 1420773..1422893 (+) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACI3L8_RS06405 (ACI3L8_06405) trmH 1422947..1423630 (+) 684 WP_005430068.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACI3L8_RS06410 (ACI3L8_06410) recG 1423963..1426044 (+) 2082 WP_017189969.1 ATP-dependent DNA helicase RecG Machinery gene
  ACI3L8_RS06415 (ACI3L8_06415) - 1426279..1428264 (+) 1986 WP_404972009.1 prolyl oligopeptidase family serine peptidase -
  ACI3L8_RS06420 (ACI3L8_06420) - 1428517..1429908 (+) 1392 WP_009698969.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76702.63 Da        Isoelectric Point: 7.9691

>NTDB_id=958654 ACI3L8_RS06410 WP_017189969.1 1423963..1426044(+) (recG) [Vibrio campbellii strain LB3]
MSAQMLSAIPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958654 ACI3L8_RS06410 WP_017189969.1 1423963..1426044(+) (recG) [Vibrio campbellii strain LB3]
ATGTCTGCCCAAATGTTATCTGCTATTCCTTTAACCTCTCTGTCTGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCCAA
AGTTGGCTTGCATAGCGTTCAAGATCTACTGTTCCACCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAGTTGCATGCTGGGCTTTGGGCGGCGGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACAGTAAAAATCAGCGACGGCAATGGCACCATTACTCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATAAAGCGTGGTGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAACAAAAGCCGGATGTGGAACAAAGCTTAACCCCCGTTTATCCAACCACCGACGGGTTACGTCAA
ATCACTTTGCGTAACCTGACGGAACAAGCCTTATCACTCCTCGATAAAGCCGCAGTGCAAGAGTTGCTGCCTTCCGGTTT
GTACAATCACCAGATCACCATGTCGCAAGCATTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCAGCTCAAATTCGTTTGATCATGGAAGAATTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTCGTTAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTCTAGTTGCTGCGCTTGCTGCCGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAACAACACGCGATTAACTTCGCTAATTGGTTTGAGAAAATGGGCATTCA
AGTCGGTTGGCTGGCGGGCAAATTAAAAGGTAAAGCCAAAGAAGCCGAACTAGCCCGAATTGCCAGTGGTGAAGCGCAAA
TGGTCGTGGGCACTCACGCTCTTTTCCAAGAGCATGTTGAGTTTCATCATCTTGCTTTGGTCATTATTGATGAACAGCAC
CGCTTTGGTGTCCACCAGCGTTTAGAGCTGCGTGAGAAAGGTGCCAAACAAGGCGCTTATCCACATCAGCTCATCATGAC
AGCAACGCCGATTCCGCGAACGTTAGCTATGACTGCTTATGCCGACTTAGAAACGTCGGTGATTGATGAATTACCGCCGG
GTCGAACACCAATCCAGACCGTCGCGATTCCAGACACCAAACGCGATGATATTGTCGAACGAGTGCGCAATGCCTGCTTA
AACGAAGGCAAACAAGCTTATTGGGTATGTACCTTAATTGATGAGTCTGAAGTCTTGGAGGCTCAAGCCGCCGCCGATAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTAGTGCACGGACGAATGAAGCCCGCAGAAAAACAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTCGCAACTACGGTGATTGAAGTGGGCGTGGACGTGCCC
AATTCCAGTTTGATGATCATCGAGAACCCAGAGCGCTTAGGTTTAGCTCAGTTGCACCAGTTGAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGTTGTATCACTCACCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAACGACGGCTTCGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAACAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTGATTCCGGAAGTTCAACGCATCGCGCGTTA
CATTCATGACAATTACCCAACGAATGCGACAGCAATTATTGACCGTTGGTTAGGTGAGCGTGACATTTACTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.822

97.114

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.822

97.114

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

39.422

94.805

0.374