Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACI3L7_RS04675 Genome accession   NZ_CP173387
Coordinates   994115..996196 (-) Length   693 a.a.
NCBI ID   WP_258471217.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 989115..1001196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS04665 (ACI3L7_04665) - 990304..991695 (-) 1392 WP_050904723.1 uracil-xanthine permease family protein -
  ACI3L7_RS04670 (ACI3L7_04670) - 991948..993909 (-) 1962 WP_404970291.1 prolyl oligopeptidase family serine peptidase -
  ACI3L7_RS04675 (ACI3L7_04675) recG 994115..996196 (-) 2082 WP_258471217.1 ATP-dependent DNA helicase RecG Machinery gene
  ACI3L7_RS04680 (ACI3L7_04680) trmH 996597..997280 (-) 684 WP_005430068.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACI3L7_RS04685 (ACI3L7_04685) spoT 997334..999454 (-) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACI3L7_RS04690 (ACI3L7_04690) rpoZ 999494..999766 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  ACI3L7_RS04695 (ACI3L7_04695) gmk 999930..1000553 (-) 624 WP_005430186.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76658.58 Da        Isoelectric Point: 7.9691

>NTDB_id=958499 ACI3L7_RS04675 WP_258471217.1 994115..996196(-) (recG) [Vibrio campbellii strain LB135]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958499 ACI3L7_RS04675 WP_258471217.1 994115..996196(-) (recG) [Vibrio campbellii strain LB135]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACCTCTCTGTCTGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCCAA
AGTTGGCTTGCATAGCGTTCAAGATCTACTGTTCCACCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATTG
CCAAGCTGCATGCCGGGCTCTGGGCGGCAGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACAGTAAAAATCAGCGACGGCAATGGCACCATTACTCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATAAAGCGTGGTGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAACAAAAGCCGGATGTGGAACAAAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGTCAA
ATCACTTTGCGTAACCTGACGGAACAAGCCTTATCACTCCTCGATAAAGCCGCAGTGCAAGAGTTGCTGCCTTCCGGTTT
GTACAATCACCAGATCACCATGTCGCAAGCATTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCAGCTCAAATTCGTTTGATCATGGAAGAATTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTCGTTAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTTTAGTTGCCGCGCTTGCTGCCGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAACTGCTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTTGAAAAAATGGGCATTCA
AGTCGGTTGGCTGGCGGGCAAATTAAAAGGTAAAGCCAAAGAAGCCGAACTAGCCCGAATTGCCAGTGGTGAAGCGCAAA
TGGTAGTAGGCACTCACGCCCTCTTCCAAGAACATGTTGAGTTCCATCATCTTGCTTTGGTCATTATTGATGAACAGCAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTGCGTGAGAAAGGCGCGAAACAAGGCGCTTATCCACATCAGCTCATCATGAC
AGCAACGCCGATTCCGCGAACGTTAGCCATGACTGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAGTTACCGCCGG
GTCGAACACCAATCCAGACTGTCGCAATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCTTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTATGTACCTTAATTGATGAATCTGAGGTCTTGGAAGCTCAAGCCGCCGCTGACAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGCCTTGTGCACGGACGAATGAAGCCCGCTGAGAAGCAAG
CGGTAATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTTGCAACGACAGTGATTGAAGTTGGCGTTGACGTCCCC
AACTCCAGCCTGATGATCATCGAGAACCCAGAGCGTTTAGGTTTGGCTCAGTTGCATCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGCTGTATCACTCGCCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAACGACGGCTTTGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTAGGTACCAAACAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGACCAGCGCTTAATTCCAGAAGTTCAACGCATTGCGCGTTA
CATTCATGACAACTACCCAACGAATGCGGCAGCAATTATTGACCGTTGGTTAGGTGAGCGTGACATTTATTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.822

97.114

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.822

97.114

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

39.422

94.805

0.374