Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AABA07_RS06740 Genome accession   NZ_AP028608
Coordinates   1338681..1339403 (-) Length   240 a.a.
NCBI ID   WP_001820349.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333681..1344403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA07_RS06730 (TKY120829_13410) - 1336255..1337421 (-) 1167 WP_000521372.1 MalY/PatB family protein -
  AABA07_RS06735 (TKY120829_13420) - 1337429..1338523 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  AABA07_RS06740 rcrP 1338681..1339403 (-) 723 WP_001820349.1 ATP-binding cassette domain-containing protein Regulator
  AABA07_RS06745 - 1339590..1340111 (-) 522 Protein_1333 ABC transporter transmembrane domain-containing protein -
  AABA07_RS06750 (TKY120829_13440) - 1340129..1340362 (-) 234 WP_000768985.1 hypothetical protein -
  AABA07_RS06755 (TKY120829_13450) amiA 1340534..1342492 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  AABA07_RS06760 (TKY120829_13460) - 1342696..1344318 (-) 1623 WP_000017792.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27150.04 Da        Isoelectric Point: 5.0452

>NTDB_id=95849 AABA07_RS06740 WP_001820349.1 1338681..1339403(-) (rcrP) [Streptococcus pneumoniae strain Sep3]
MNFNHVYFGYDENRPVLKDIICSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=95849 AABA07_RS06740 WP_001820349.1 1338681..1339403(-) (rcrP) [Streptococcus pneumoniae strain Sep3]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTATTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362

Multiple sequence alignment