Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACI3L9_RS09390 Genome accession   NZ_CP173385
Coordinates   2059609..2061690 (-) Length   693 a.a.
NCBI ID   WP_009698967.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2054609..2066690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS09380 (ACI3L9_09380) - 2055798..2057189 (-) 1392 WP_079402012.1 uracil-xanthine permease family protein -
  ACI3L9_RS09385 (ACI3L9_09385) - 2057442..2059403 (-) 1962 WP_079402013.1 S9 family peptidase -
  ACI3L9_RS09390 (ACI3L9_09390) recG 2059609..2061690 (-) 2082 WP_009698967.1 ATP-dependent DNA helicase RecG Machinery gene
  ACI3L9_RS09395 (ACI3L9_09395) trmH 2061967..2062650 (-) 684 WP_009707954.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACI3L9_RS09400 (ACI3L9_09400) spoT 2062704..2064824 (-) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACI3L9_RS09405 (ACI3L9_09405) rpoZ 2064864..2065136 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  ACI3L9_RS09410 (ACI3L9_09410) gmk 2065300..2065923 (-) 624 WP_005430186.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76688.60 Da        Isoelectric Point: 7.9691

>NTDB_id=958427 ACI3L9_RS09390 WP_009698967.1 2059609..2061690(-) (recG) [Vibrio campbellii strain LB198]
MSAQMLSAIPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEGELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958427 ACI3L9_RS09390 WP_009698967.1 2059609..2061690(-) (recG) [Vibrio campbellii strain LB198]
ATGTCTGCCCAAATGTTATCTGCTATTCCTTTAACCTCTCTGTCTGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCCAA
AGTTGGCTTGCATAGCGTTCAAGATCTACTGTTCCACCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAGTTGCATGCTGGGCTTTGGGCGGCGGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAGATCAGCGACGGCAATGGCACCATTACCCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCAAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAGCAAAAGCCGGATGTGGAACAGAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGCCAA
ATCACTTTGCGTAACCTGACGGAGCAAGCCTTATCACTCCTCGATAAAGCCGCTGTACAAGAGTTGCTTCCTTCTGGTTT
GTACAATCACCAGATCACCATGTCGCAAGCACTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCTGCTCAAATTCGGTTGATCATGGAAGAGTTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTCGTTAAAGAAATTGAAGCCGATTTGGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTTTAGTTGCCGCACTCGCAGCAGTCAGAGCAATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTTGAGAAAATGGGCATTCA
GGTCGGTTGGCTAGCTGGAAAATTAAAAGGTAAAGCCAAAGAAGGCGAATTGGCGCGTATTGCCAGTGGTGAAGCGCAAA
TGGTCGTGGGCACTCACGCCCTCTTCCAAGAACATGTTGAGTTCCATCATCTTGCTTTGGTCATTATTGATGAACAACAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCGCACCAACTCATAATGAC
GGCAACGCCAATTCCGCGAACATTAGCCATGACAGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAGTTACCGCCAG
GTCGAACACCAATCCAAACCGTCGCGATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCCTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTATGTACCTTGATTGATGAGTCCGAAGTCTTGGAGGCTCAAGCTGCTGCCGACAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTAGTGCACGGACGAATGAAGCCCGCAGAGAAGCAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTCGCAACGACAGTGATTGAAGTTGGCGTAGACGTCCCC
AACTCCAGTTTGATGATCATCGAGAACCCAGAGCGTTTAGGTTTGGCTCAGTTGCACCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCTAGCCATTGTGTGTTGCTGTATCACTCGCCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAATGACGGCTTTGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAGCAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTAATTCCGGAAGTTCAACGCATTGCACGTTA
CATTCATGACAACTACCCGACGAATGCGACCGCAATTATTGATCGTTGGTTAGGCGAGCGTGACATTTATTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.822

97.114

0.387
  recG/mmsA Streptococcus pneumoniae R36A

39.822

97.114

0.387
  recG Bacillus subtilis subsp. subtilis str. 168

39.422

94.805

0.374