Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACI1GX_RS09260 Genome accession   NZ_CP173358
Coordinates   1973836..1975917 (-) Length   693 a.a.
NCBI ID   WP_237593409.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2305225E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1968836..1980917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1GX_RS09245 (ACI1GX_09235) menB 1970634..1971491 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  ACI1GX_RS09250 (ACI1GX_09240) - 1971626..1973332 (-) 1707 WP_404811299.1 RelA/SpoT family protein -
  ACI1GX_RS09255 (ACI1GX_09245) rpoZ 1973428..1973709 (-) 282 WP_005609261.1 DNA-directed RNA polymerase subunit omega -
  ACI1GX_RS09260 (ACI1GX_09250) recG 1973836..1975917 (-) 2082 WP_237593409.1 ATP-dependent DNA helicase RecG Machinery gene
  ACI1GX_RS09265 (ACI1GX_09255) - 1976041..1976469 (-) 429 WP_215578120.1 type II toxin-antitoxin system VapC family toxin -
  ACI1GX_RS09270 (ACI1GX_09260) - 1976469..1976756 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACI1GX_RS09275 (ACI1GX_09265) proS 1976962..1978677 (+) 1716 WP_039709409.1 proline--tRNA ligase -
  ACI1GX_RS09280 (ACI1GX_09270) - 1978743..1978931 (-) 189 WP_005602684.1 hypothetical protein -
  ACI1GX_RS09285 (ACI1GX_09275) - 1978934..1979515 (-) 582 WP_005606496.1 sigma-70 family RNA polymerase sigma factor -
  ACI1GX_RS09290 (ACI1GX_09280) msrP 1979604..1980560 (+) 957 WP_012263408.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77231.16 Da        Isoelectric Point: 8.8067

>NTDB_id=958184 ACI1GX_RS09260 WP_237593409.1 1973836..1975917(-) (recG) [Actinobacillus pleuropneumoniae strain APL2305225E]
MSEQLLDGVPLTALSGVGAAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLTAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTESLKQ
NSLRKLTEQALALLDKIKVGELLPDQYNPHKYSLKEALQLLHRPPPDISAEQLEKGDHPAQKRLIFEELLAHNLAMQQVR
IGVNQLSATPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRSFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAEALIRRWLGERTEYSNV

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958184 ACI1GX_RS09260 WP_237593409.1 1973836..1975917(-) (recG) [Actinobacillus pleuropneumoniae strain APL2305225E]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCCGGGGTGGGTGCGGCGATTGCGGAAAAACTGAGTCG
AATCGGCATTAATAACGTGCAAGATCTGTTATTTCATTTGCCTTATCGCTATGAAGATCGCACGCGAATTACACCGATTA
TCGATGTGCGTCCGGAAAGTTTCTCAACTATCGAAGGCATCGTGCAAGTTACCGAAGTGCAATTCGGCCGCCGTCCGATT
TTGTCCACCGTACTGTCTGACGGCACCAGTAAAATTACGCTGAAATTCTTTAATTTTAATGCGGGAATGAAAAACAGCCT
GACTGCCGGCACACGTGTAAAAGCTTTTGGCGAAATCAAACGCGGACGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACTTTAACGCCGATTTACTCCACTACGGAAAGCCTGAAGCAA
AATTCGTTACGTAAACTCACCGAGCAAGCGTTAGCGTTATTGGATAAAATCAAAGTCGGCGAGTTACTGCCTGATCAATA
TAATCCGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTGCATCGCCCGCCACCGGATATTTCTGCCGAGCAGTTGG
AAAAAGGTGATCATCCGGCACAAAAACGGCTAATTTTTGAAGAATTATTGGCACACAACTTAGCAATGCAGCAAGTTCGA
ATTGGGGTCAATCAGCTTTCCGCCACACCGCTACGCTATCAAACCGATCTCAAAAGTCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCCCAAAGCCGTGTGACGGCGGATATCGAGCAAGATTTAGCCAAATCCTCACCAATGATGCGATTAG
TACAAGGCGATGTCGGATCGGGCAAAACTTTAGTTGCTGCGCTTGCCGCCCTGCTTGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACCGAAATCCTTGCCGAGCAGCACGCCAATAACTTTGCAAACTGGCTACGCTCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTAAAAGGCAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACGCACGCCCTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
CGCCACGCCAATCCCTCGCACCTTAGCGATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGAACGCCGATTACTACCGTGGCGATTTCGGAAGACAGACGAGATGAAATTGTGCGTCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCACAAGCTGCGGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGCATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
AAATTATGGCGGAATTTAAAGCGGCGAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCAAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTCGGCAAAATCTCGAGTAAACGCTTACAAGTGTTAC
GTGACAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTAGAAATTCGCGGCACGGGTGAAATTCTCGGTACCAAACAA
ACCGGTATGGCGGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATTCCGTTGGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCCGAAGCACTGATTCGCCGCTGGCTGGGCGAGCGTACCGAATACAGCAACGTCT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(292-407)

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.192

98.268

0.483
  recG Bacillus subtilis subsp. subtilis str. 168

39.143

97.691

0.382
  recG/mmsA Streptococcus pneumoniae R6

38.685

94.372

0.365
  recG/mmsA Streptococcus pneumoniae R36A

38.685

94.372

0.365