Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIX90_RS10035 Genome accession   NZ_CP173319
Coordinates   2095697..2097778 (-) Length   693 a.a.
NCBI ID   WP_404811024.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APL2401251E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2090697..2102778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX90_RS10020 (ACIX90_10015) menB 2092495..2093352 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  ACIX90_RS10025 (ACIX90_10020) - 2093487..2095193 (-) 1707 WP_404811023.1 RelA/SpoT family protein -
  ACIX90_RS10030 (ACIX90_10025) rpoZ 2095289..2095570 (-) 282 WP_012263402.1 DNA-directed RNA polymerase subunit omega -
  ACIX90_RS10035 (ACIX90_10030) recG 2095697..2097778 (-) 2082 WP_404811024.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIX90_RS10040 (ACIX90_10035) - 2097902..2098267 (-) 366 WP_005599445.1 type II toxin-antitoxin system VapC family toxin -
  ACIX90_RS10045 (ACIX90_10040) - 2098330..2098617 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACIX90_RS10050 (ACIX90_10045) proS 2098823..2100538 (+) 1716 WP_039709409.1 proline--tRNA ligase -
  ACIX90_RS10055 (ACIX90_10050) - 2100604..2100792 (-) 189 WP_005602684.1 hypothetical protein -
  ACIX90_RS10060 (ACIX90_10055) - 2100795..2101376 (-) 582 WP_005606496.1 sigma-70 family RNA polymerase sigma factor -
  ACIX90_RS10065 (ACIX90_10060) msrP 2101465..2102421 (+) 957 WP_005619040.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77092.14 Da        Isoelectric Point: 9.3182

>NTDB_id=958130 ACIX90_RS10035 WP_404811024.1 2095697..2097778(-) (recG) [Actinobacillus pleuropneumoniae strain APL2401251E]
MSEQLLDGVPLTALSGVGAAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLAAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQ
NSLRKLTEQALALLDKIKVGELLPDEYNPHKYSLKEALQLLHRPPPDISAKQLEKGDHPAQKRLIFEELLAHNLAMQQVR
VGVNQLAAAPLRYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAKALIRRWLGERTEYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958130 ACIX90_RS10035 WP_404811024.1 2095697..2097778(-) (recG) [Actinobacillus pleuropneumoniae strain APL2401251E]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCCGGGGTGGGTGCGGCGATTGCGGAAAAACTTAGCCG
AATCGGCATTAATAACGTGCAAGATCTGTTATTTCATTTGCCTTATCGCTATGAAGATCGCACGCGAATTACACCGATTA
TCGATGTGCGTCCGGAAAGTTTCTCAACTATCGAAGGCATCGTGCAAGTTACCGAAGTGCAATTCGGCCGCCGTCCGATT
TTGTCCACCGTACTGTCTGACGGCACCAGTAAAATCACGCTGAAATTCTTCAATTTTAATGCGGGAATGAAAAACAGCCT
GGCCGCCGGCACACGTGTCAAAGCTTTTGGCGAAATCAAACGTGGGCGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACGTTAACGCCGATTTACTCCACCACAGAAGGTTTAAAGCAA
AATTCGTTACGTAAACTCACTGAGCAAGCGTTAGCGTTATTGGATAAAATCAAAGTCGGTGAGCTGTTGCCGGACGAATA
CAATCCGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTACACCGTCCGCCACCGGATATTTCTGCCAAACAGCTGG
AAAAAGGCGATCATCCGGCACAAAAACGCCTAATTTTTGAAGAATTATTGGCGCACAACTTAGCAATGCAGCAAGTACGA
GTCGGAGTCAATCAGCTTGCTGCAGCACCGCTACGCTATCAAACCGATCTCAAAAGCCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCACAAAGCCGTGTGACGGCGGATATTGAGCAGGACTTAGCCAAATCCTCACCAATGATGCGTTTAG
TACAAGGCGATGTCGGCTCGGGCAAAACCTTAGTCGCTGCGCTTGCCGCCCTGCTGGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACCGAAATCCTCGCTGAACAGCACGCCAATAACTTTGCCAACTGGCTACGTCCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTAAAAGGCAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACGCACGCCCTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
TGCTACGCCAATTCCTCGTACCTTAGCAATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGAACGCCGATTACTACCGTGGCGATTTCGGAAGACAGACGAGATGAAATTGTGCGTCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCACAAGCTGCGGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGCATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
AAATTATGGCGGAATTTAAAGCGGCGAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCCAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTCGGCAAAATCTCGAGTAAACGCTTACAAGTGTTAC
GTGACAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTGGAAATTCGTGGCACGGGCGAGATTCTCGGCACGAAGCAA
ACCGGTATGGCGGAATTTAAAGTAGCGAATTTAATGCGAGATCGCAAAATGATTCCATTAGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCAAAAGCACTGATTCGCCGCTGGCTGGGCGAGCGTACCGAATACAGCAACGCCT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(292-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.558

97.835

0.485
  recG Bacillus subtilis subsp. subtilis str. 168

38.996

97.691

0.381
  recG/mmsA Streptococcus pneumoniae R6

39.144

94.372

0.369
  recG/mmsA Streptococcus pneumoniae R36A

39.144

94.372

0.369