Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIX3D_RS10225 Genome accession   NZ_CP173318
Coordinates   2132818..2134899 (-) Length   693 a.a.
NCBI ID   WP_005599444.1    Uniprot ID   A0ABN5MNK1
Organism   Actinobacillus pleuropneumoniae strain APL2210214E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127818..2139899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX3D_RS10210 (ACIX3D_10215) menB 2129616..2130473 (-) 858 WP_005599432.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  ACIX3D_RS10215 (ACIX3D_10220) - 2130608..2132314 (-) 1707 WP_005599433.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACIX3D_RS10220 (ACIX3D_10225) rpoZ 2132410..2132691 (-) 282 WP_005599441.1 DNA-directed RNA polymerase subunit omega -
  ACIX3D_RS10225 (ACIX3D_10230) recG 2132818..2134899 (-) 2082 WP_005599444.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIX3D_RS10230 (ACIX3D_10235) - 2135023..2135388 (-) 366 WP_005599445.1 type II toxin-antitoxin system VapC family toxin -
  ACIX3D_RS10235 (ACIX3D_10240) - 2135451..2135738 (-) 288 WP_005599447.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ACIX3D_RS10240 (ACIX3D_10245) proS 2135944..2137659 (+) 1716 WP_005599448.1 proline--tRNA ligase -
  ACIX3D_RS10245 (ACIX3D_10250) - 2137725..2137913 (-) 189 WP_005602684.1 hypothetical protein -
  ACIX3D_RS10250 (ACIX3D_10255) - 2137916..2138497 (-) 582 WP_005599450.1 sigma-70 family RNA polymerase sigma factor -
  ACIX3D_RS10255 (ACIX3D_10260) msrP 2138586..2139542 (+) 957 WP_005619040.1 protein-methionine-sulfoxide reductase catalytic subunit MsrP -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77145.08 Da        Isoelectric Point: 8.1638

>NTDB_id=958074 ACIX3D_RS10225 WP_005599444.1 2132818..2134899(-) (recG) [Actinobacillus pleuropneumoniae strain APL2210214E]
MSEQLLDGVPLTALSGVGAAIAEKLSRIGINNVQDLLFHLPYRYEDRTRITPIIDVRPESFSTIEGIVQVTEVQFGRRPI
LSTVLSDGTSKITLKFFNFNAGMKNSLTAGTRVKAFGEIKRGRFMAEIHHPEYQIIRNNQPLELAETLTPIYSTTEGLKQ
NSLRKLTEQALALLDKIKVGELLPDEYNPHKYSLKEALQLLHRPPPDISAEQLEKGEHPAQKRLIFEELLAHNLAMQQVR
VGVNQLTATPLCYQTDLKSRFLASLPFKPTNAQSRVTADIEQDLAKSSPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGEVQMIIGTHALFQESVEFHNLALVIIDEQH
RFGVHQRLTLREKGAKDGIYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEIVRRVYAACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQEIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLLYKPPLGKISSKRLQVLRDSQDGFYIAEKDLEIRGTGEILGTKQ
TGMAEFKVANLMRDRKMIPLVQNYAKQIIQQNPPLAEALIRRWLGERTEYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=958074 ACIX3D_RS10225 WP_005599444.1 2132818..2134899(-) (recG) [Actinobacillus pleuropneumoniae strain APL2210214E]
ATGAGCGAACAATTACTAGACGGTGTGCCACTTACCGCCCTTTCCGGGGTGGGTGCGGCGATTGCGGAAAAACTTAGCCG
AATCGGCATTAATAACGTACAAGATCTATTATTTCATTTGCCTTATCGCTATGAAGATCGCACCCGAATTACGCCGATTA
TCGATGTGCGTCCGGAAAGTTTTTCTACCATCGAAGGTATCGTGCAAGTTACCGAAGTACAATTCGGTCGCCGTCCGATT
TTATCCACCGTGCTTTCTGACGGCACCAGTAAAATTACGCTGAAATTCTTTAATTTTAATGCGGGGATGAAAAACAGCCT
GACTGCCGGCACACGTGTAAAAGCTTTTGGCGAAATCAAACGCGGACGTTTTATGGCGGAAATTCATCACCCCGAATATC
AAATTATTCGCAATAATCAACCGCTTGAACTTGCCGAAACGTTAACGCCGATTTACTCCACAACAGAAGGTTTAAAGCAA
AATTCGTTACGTAAGCTCACCGAGCAAGCATTAGCGTTATTAGATAAAATCAAAGTCGGTGAACTGTTGCCGGACGAATA
CAATCCGCATAAATACAGCTTAAAAGAAGCGTTGCAATTATTACACCGCCCGCCGCCGGATATTTCTGCCGAACAGTTGG
AAAAAGGTGAGCATCCGGCACAAAAACGGCTGATTTTTGAAGAATTACTGGCGCACAACTTAGCAATGCAGCAAGTACGA
GTCGGAGTCAATCAGCTTACTGCTACACCGCTATGTTATCAAACCGATCTCAAAAGTCGCTTTTTGGCGAGCTTGCCGTT
TAAACCGACCAACGCCCAAAGCCGGGTGACAGCGGATATCGAGCAAGATTTAGCCAAATCCTCACCAATGATGCGATTAG
TACAAGGCGATGTCGGATCGGGCAAAACTTTAGTTGCTGCGCTTGCCGCCCTGCTTGCGATTGATAACGGCAAACAAGTG
GCATTAATGGCACCGACCGAAATCCTTGCCGAGCAGCACGCCAATAACTTTGCAAACTGGCTACGCCCGTTCGGTATTGA
AGTCGGCTGGCTTGCCGGTAAAGTCAAAGGCAAAGCTCGCACCGCACAACTGGAAGCGATTAAAAACGGCGAAGTGCAGA
TGATTATCGGCACGCACGCCCTCTTCCAAGAAAGCGTCGAGTTTCATAACCTCGCATTAGTGATTATTGATGAACAACAC
CGTTTTGGTGTACACCAACGCTTAACCCTACGTGAAAAAGGGGCGAAAGACGGTATTTATCCGCACCAGCTAATTATGAC
TGCTACGCCAATTCCTCGTACCTTAGCAATGACGGTCTATGCCGATCTGGATACCTCTATTATTGACGAGCTACCACCGG
GGCGAACGCCGATTACTACCGTGGCGATTTCGGAAGACAGACGAGATGAAATTGTGCGTCGTGTGTATGCCGCCTGCAAA
AACGAAAAACGCCAAGCCTATTGGGTTTGTACCCTAATTGATGAATCGGAAGTCTTGGAAGCACAAGCTGCGGCGGCGAT
TGCCGAAGATTTACAACGAGCCTTACCGGATTTACGCATCGGCTTGGTACACGGACGAATGAAGCCGCAAGAAAAGCAAG
AAATTATGGCGGAATTTAAAGCGGCGAATATCGATTTATTGGTTGCCACCACAGTGATTGAAGTGGGGGTTGATGTGCCG
AATGCAAGCCTAATGATTATCGAAAACTCCGAACGTTTAGGGCTTGCTCAACTCCATCAATTACGTGGACGTGTCGGACG
TGGTGCAACCGCTTCCCATTGCGTGTTGCTGTATAAACCGCCGCTCGGCAAAATCTCGAGTAAACGCTTACAAGTGTTAC
GTGACAGCCAAGACGGTTTCTATATTGCCGAAAAAGATTTAGAAATTCGCGGCACGGGTGAAATTCTCGGTACCAAACAA
ACCGGTATGGCGGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATTCCATTAGTACAAAACTATGCCAAGCA
AATTATTCAGCAAAATCCACCGCTTGCCGAAGCACTGATTCGCCGCTGGCTGGGCGAGCGTACCGAATACAGCAACGCCT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(476-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(292-407)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.481

97.403

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

38.996

97.691

0.381
  recG/mmsA Streptococcus pneumoniae R6

38.931

94.517

0.368
  recG/mmsA Streptococcus pneumoniae R36A

38.931

94.517

0.368