Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIRXM_RS06195 Genome accession   NZ_CP173234
Coordinates   1209311..1211392 (+) Length   693 a.a.
NCBI ID   WP_410687799.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1204311..1216392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS06175 (ACIRXM_06180) gapA 1204845..1205849 (-) 1005 WP_035688995.1 glyceraldehyde-3-phosphate dehydrogenase -
  ACIRXM_RS06180 (ACIRXM_06185) gmk 1206143..1206769 (+) 627 WP_035688997.1 guanylate kinase -
  ACIRXM_RS06185 (ACIRXM_06190) rpoZ 1206836..1207102 (+) 267 WP_035689000.1 DNA-directed RNA polymerase subunit omega -
  ACIRXM_RS06190 (ACIRXM_06195) spoT 1207175..1209298 (+) 2124 WP_410687797.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACIRXM_RS06195 (ACIRXM_06200) recG 1209311..1211392 (+) 2082 WP_410687799.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIRXM_RS06200 (ACIRXM_06205) murI 1211468..1212256 (+) 789 WP_410687801.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78106.73 Da        Isoelectric Point: 8.8546

>NTDB_id=957724 ACIRXM_RS06195 WP_410687799.1 1209311..1211392(+) (recG) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MAMDVLGAVLLTTLSGVGAAISAKLSRIGINNLQDLLFHLPSRYEDRTRITPIIDLRPEQYATISAVVQLCEVQFGRRPI
LTVVVSDGTSKLTLRFFNFNAAMRNSFQVGTKVKAFGEIKRGRFMAEIHHPEYQILRDDTPLIMAETLTPIYPTTEGLKQ
NSLRKLTDQALALLDKVQLPEILPDEFNPYPYSLKEAIRFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKVR
SNIQQFFALPLQYQTDLKSRFLQRLPFSPTNAQRRVVQDIERDLQKPYPMMRLVQGDVGSGKTLVAALAALLAIDNQKQV
ALMAPTEILAEQHFANFQNWFEPLGIKVGWLAGKVKGKARQAVLEQMKAGEVQMIVGTHALFQQDVEFHDLALVIIDEQH
RFGVHQRLMLREKGEKSGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAVSEERRGEIVNRVYHACM
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLSKALPNLRIGLVHGRMKATEKQAIMASFKAAELDVLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSKKRLQVLRESQDGFYISEKDLEIRGPGEVLGTKQ
TGVAEFKVANLMRDRKMIPTVQHYAREMIVKYPQLSEALIQRWLDEKTIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=957724 ACIRXM_RS06195 WP_410687799.1 1209311..1211392(+) (recG) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGGCTATGGACGTTTTAGGTGCAGTTCTCCTCACGACATTATCGGGCGTGGGGGCAGCAATTTCAGCGAAACTCAGCCG
TATTGGGATTAATAATCTGCAAGATCTGCTTTTCCATTTACCGAGCCGTTATGAAGATCGCACAAGAATTACGCCCATTA
TCGATCTTCGCCCCGAACAATATGCCACCATTAGTGCTGTAGTGCAGCTCTGCGAAGTGCAATTTGGTCGCCGTCCGATT
TTAACGGTCGTGGTGTCTGATGGTACATCGAAGCTGACCTTACGTTTTTTCAATTTCAATGCCGCAATGCGAAACAGCTT
TCAAGTGGGAACGAAAGTGAAAGCCTTTGGCGAGATTAAACGAGGTCGCTTTATGGCAGAAATTCATCACCCCGAATATC
AAATTCTGCGTGATGATACTCCCTTGATAATGGCAGAAACCCTCACCCCGATTTATCCCACAACGGAGGGGCTGAAACAA
AATTCCTTGCGAAAGCTCACCGATCAAGCCTTGGCACTGTTAGATAAAGTGCAGCTGCCCGAAATTTTGCCTGATGAATT
TAATCCTTATCCATACAGTTTGAAAGAGGCGATCCGTTTTCTACACCGTCCACCGCCAGATGTGTCGTTGGAAATGTTGG
AAAAAGGGCAACACCCCGCACAAGTGCGGTTAATTTTTGAAGAGTTATTGGCACATAATTTGGCAATGCAAAAAGTGCGG
TCAAATATTCAGCAGTTTTTTGCGCTGCCCTTACAATATCAAACGGATCTCAAATCACGCTTTTTACAGCGTTTACCCTT
CAGCCCTACCAATGCACAACGCCGAGTGGTGCAGGATATTGAGCGGGATTTGCAAAAGCCTTATCCAATGATGCGATTAG
TGCAGGGCGATGTGGGATCGGGGAAAACCTTGGTCGCGGCATTAGCTGCACTGCTAGCAATTGATAATCAAAAGCAAGTG
GCACTTATGGCACCAACAGAAATTTTGGCGGAACAGCATTTTGCCAATTTCCAAAATTGGTTTGAGCCTTTAGGCATCAA
AGTGGGGTGGCTGGCAGGAAAAGTCAAAGGCAAGGCGCGCCAAGCGGTACTTGAACAAATGAAAGCGGGTGAAGTGCAAA
TGATTGTCGGCACGCACGCTCTATTTCAGCAAGATGTGGAATTTCACGATTTAGCATTGGTGATCATTGATGAACAACAT
CGCTTTGGCGTTCATCAGCGGCTAATGCTGCGGGAAAAAGGCGAAAAATCAGGCAATTACCCTCATCAATTAATTATGAC
TGCCACCCCGATTCCACGTACCCTAGCAATGACGGTGTATGCGGATTTGGATACATCAATTATTGATGAATTACCACCAG
GCAGAACGCCGATTACCACCGTTGCGGTGTCCGAAGAACGCCGCGGTGAAATTGTAAACCGCGTGTATCACGCCTGTATG
AATGAAAAACGCCAAGCCTATTGGGTGTGTACTTTAATTGACGAAAGCGAGGTCTTGGAGGCACAAGCGGCAGAGGCGAT
ATGGGAAGATCTCAGTAAAGCACTTCCAAACTTACGCATCGGATTAGTACACGGGCGTATGAAAGCGACAGAAAAACAAG
CAATTATGGCGAGTTTCAAAGCCGCCGAATTAGATGTGTTGGTGGCAACCACGGTAATTGAAGTAGGAGTGGACGTGCCG
AATGCCAGCTTGATGATTATTGAAAATGCAGAACGCTTAGGCTTGTCGCAATTACACCAGTTGCGTGGGCGAGTGGGGCG
TGGCAGCACCGCCTCTTTCTGCGTGTTAATGTATAAACCGCCACTGGGTAAGGTGTCGAAAAAACGTCTGCAAGTGCTGC
GTGAAAGTCAGGACGGCTTTTATATTTCGGAAAAAGATCTTGAAATTCGTGGGCCGGGGGAAGTGTTAGGCACAAAACAA
ACGGGCGTTGCCGAATTTAAAGTAGCGAATTTAATGCGAGATCGAAAAATGATCCCAACTGTACAGCATTATGCTAGAGA
AATGATCGTGAAATATCCCCAACTTTCTGAAGCTTTAATTCAACGCTGGCTTGATGAGAAAACCATTTATTCCAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

DEAD/DEAH box helicase (DEAD)

(291-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.48

97.114

0.481
  recG/mmsA Streptococcus pneumoniae R6

40.735

94.228

0.384
  recG/mmsA Streptococcus pneumoniae R36A

40.735

94.228

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

38.633

97.114

0.375