Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACIRXM_RS05595 Genome accession   NZ_CP173234
Coordinates   1086825..1087592 (+) Length   255 a.a.
NCBI ID   WP_264245250.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081825..1092592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS05585 (ACIRXM_05590) - 1083064..1084020 (+) 957 WP_410687689.1 alpha-2,3-sialyltransferase -
  ACIRXM_RS05590 (ACIRXM_05595) - 1084117..1086666 (-) 2550 WP_410687690.1 penicillin-binding protein 1A -
  ACIRXM_RS05595 (ACIRXM_05600) comA 1086825..1087592 (+) 768 WP_264245250.1 hypothetical protein Machinery gene
  ACIRXM_RS05600 (ACIRXM_05605) - 1087622..1088134 (+) 513 WP_017806830.1 PilN domain-containing protein -
  ACIRXM_RS05605 (ACIRXM_05610) - 1088121..1088648 (+) 528 WP_410683657.1 hypothetical protein -
  ACIRXM_RS05610 (ACIRXM_05615) - 1088648..1089007 (+) 360 WP_410687692.1 hypothetical protein -
  ACIRXM_RS05615 (ACIRXM_05620) comE 1089016..1090338 (+) 1323 WP_035688106.1 type IV pilus secretin PilQ Machinery gene
  ACIRXM_RS05620 (ACIRXM_05625) aroK 1090539..1091099 (+) 561 WP_272487554.1 shikimate kinase AroK -
  ACIRXM_RS05625 (ACIRXM_05630) aroB 1091116..1092204 (+) 1089 WP_410687694.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30476.30 Da        Isoelectric Point: 7.5005

>NTDB_id=957718 ACIRXM_RS05595 WP_264245250.1 1086825..1087592(+) (comA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGECNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
DTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=957718 ACIRXM_RS05595 WP_264245250.1 1086825..1087592(+) (comA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGAATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGTGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGTT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
GATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

38.306

97.255

0.373
  comA Haemophilus influenzae Rd KW20

38.306

97.255

0.373