Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACIRXM_RS01235 Genome accession   NZ_CP173234
Coordinates   222174..222548 (-) Length   124 a.a.
NCBI ID   WP_410686916.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 217174..227548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS01215 (ACIRXM_01220) clpX 217870..219120 (-) 1251 WP_410686912.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIRXM_RS01220 (ACIRXM_01225) clpP 219124..219714 (-) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIRXM_RS01225 (ACIRXM_01230) tig 219832..221130 (-) 1299 WP_410686914.1 trigger factor -
  ACIRXM_RS01230 (ACIRXM_01235) - 221637..222188 (+) 552 Protein_237 BCCT family transporter -
  ACIRXM_RS01235 (ACIRXM_01240) dprA 222174..222548 (-) 375 WP_410686916.1 DNA-processing protein DprA Machinery gene
  ACIRXM_RS01240 (ACIRXM_01245) - 222708..223058 (-) 351 WP_410686918.1 DUF305 domain-containing protein -
  ACIRXM_RS01245 (ACIRXM_01250) - 223502..225529 (+) 2028 WP_410686920.1 BCCT family transporter -
  ACIRXM_RS01250 (ACIRXM_01255) - 225629..227407 (+) 1779 WP_410686922.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14239.56 Da        Isoelectric Point: 7.9555

>NTDB_id=957696 ACIRXM_RS01235 WP_410686916.1 222174..222548(-) (dprA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MLKNEILLRLLQVPKLGANTIQKILAEISPEQLLDYDAIAFKQMGWAEKQIQRWFNPERKFIEPALNWAQSAGNFLLNFT
EQDYPYLLKQIPSASPLLFLQGNLTALSQPQIVIVGSRYCSNFQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=957696 ACIRXM_RS01235 WP_410686916.1 222174..222548(-) (dprA) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGTTAAAAAACGAGATCTTGCTTCGCCTATTACAAGTGCCAAAACTTGGCGCAAATACAATTCAAAAAATACTGGCTGA
AATTAGCCCTGAACAGCTTTTAGACTATGACGCGATTGCTTTCAAACAAATGGGATGGGCGGAAAAACAAATTCAGCGCT
GGTTTAATCCTGAGCGTAAATTTATCGAGCCGGCGTTAAATTGGGCGCAAAGTGCGGGCAATTTTTTGCTTAATTTTACT
GAGCAAGATTATCCTTATTTGTTAAAACAAATTCCTTCCGCATCGCCGCTGTTATTTTTACAAGGAAATTTAACCGCACT
TTCGCAACCACAAATTGTCATTGTGGGCAGTCGTTATTGCTCTAATTTTCAATAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

60.684

94.355

0.573
  dprA Glaesserella parasuis strain SC1401

53.846

94.355

0.508