Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACIRXM_RS01215 Genome accession   NZ_CP173234
Coordinates   217870..219120 (-) Length   416 a.a.
NCBI ID   WP_410686912.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 212870..224120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS01195 (ACIRXM_01200) - 213317..213727 (+) 411 WP_026138449.1 DNA polymerase III subunit psi -
  ACIRXM_RS01200 (ACIRXM_01205) rimI 213729..214172 (+) 444 WP_264245499.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACIRXM_RS01205 (ACIRXM_01210) - 214333..216129 (+) 1797 WP_410686910.1 AMP-dependent synthetase/ligase -
  ACIRXM_RS01210 (ACIRXM_01215) aspA 216220..217647 (-) 1428 WP_035685584.1 aspartate ammonia-lyase -
  ACIRXM_RS01215 (ACIRXM_01220) clpX 217870..219120 (-) 1251 WP_410686912.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIRXM_RS01220 (ACIRXM_01225) clpP 219124..219714 (-) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIRXM_RS01225 (ACIRXM_01230) tig 219832..221130 (-) 1299 WP_410686914.1 trigger factor -
  ACIRXM_RS01230 (ACIRXM_01235) - 221637..222188 (+) 552 Protein_237 BCCT family transporter -
  ACIRXM_RS01235 (ACIRXM_01240) dprA 222174..222548 (-) 375 WP_410686916.1 DNA-processing protein DprA Machinery gene
  ACIRXM_RS01240 (ACIRXM_01245) - 222708..223058 (-) 351 WP_410686918.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45902.54 Da        Isoelectric Point: 4.7975

>NTDB_id=957694 ACIRXM_RS01215 WP_410686912.1 217870..219120(-) (clpX) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MTTEQQLHCSICGNDRSQVKKLISGVEGAICNECIERCHNFLVEAEQQTAETQEESEQQTEQVALPTPHQIRAHLDDYVI
GQNYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFEAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHAALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKNQAPQIIYKS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=957694 ACIRXM_RS01215 WP_410686912.1 217870..219120(-) (clpX) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGACAACAGAACAACAACTCCATTGCTCTATTTGCGGTAATGACCGTAGCCAAGTAAAAAAACTTATTTCTGGCGTAGA
AGGTGCAATTTGTAATGAATGTATTGAACGTTGCCATAATTTTTTAGTTGAAGCGGAGCAGCAAACAGCGGAAACTCAGG
AAGAAAGTGAGCAACAAACAGAACAGGTGGCATTACCTACGCCTCATCAAATTCGCGCGCATTTAGATGATTATGTCATT
GGGCAAAACTATGCCAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
TGATGTGGAACTAGGTAAAAGTAATATTTTGCTCATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTGAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAACTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACGATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGAAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGCTGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACGGGGGCGAGGGGATTGC
GTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAACCAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

AAA domain (Cdc48 subfamily) (AAA_2)

(113-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.174

99.279

0.558
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

98.558

0.529